DR406129

Overview
NameDR406129
Unique NameDR406129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406129_ssr10 microsatellite DR406129_ssr10:10..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:120..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.866e-22
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSDTCGNCDC D++QCVKKGSSY AD + T+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.634e-18
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   97 TCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 288
            TCGNCDCVD+SQCVKKG+SY  D V T+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 282
            MSD CGNCDC D SQCVKKG+S   D V TD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 282
            MS  C NCDC D SQC KKG S+    V T+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.921e-15
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MS  C NCDC D +QCVKKG+SY    V T+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CGNCDC D+SQCVKKG+SY    V  + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CGNCDC D+SQCVKKG+SY    V  + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CGNCDC D+SQCVKKG+SY    V  + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR406129 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   88 MSDTCGNCDCVDRSQCVKKGSSYAADFVGTDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CG+CDC D+SQCVKKG+SY    V  + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR406129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.866e-2266.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.634e-1860.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.807e-1764.62Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV2.209e-1556.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO4.921e-1556.06Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.870e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.870e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ6.016e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI2.286e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248N04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248N04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406129 ID=DR406129; Name=DR406129; organism=Citrus sinensis; type=EST; length=568bp
GGGGATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTAT
TTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCT
GCGGCAACTGCGACTGCGTTGACAGGAGCCAGTGTGTGAAGAAGGGAAGC
AGCTATGCTGCTGACTTCGTCGGGACTGACTTGAGCTTTGTCAGCACCGT
TGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCG
GCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCA
AACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGG
GGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACT
TCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGT
GTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAA
TATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAACCAAAAAAAA
AAAAAAAAAAAAAAAAAA
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