DR406102

Overview
NameDR406102
Unique NameDR406102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.187e-70
Identity = 136/164 (82.93%), Postives = 143/164 (87.20%), Query Frame = 3
Query:  195 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGSNQLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.025e-70
Identity = 134/163 (82.21%), Postives = 144/163 (88.34%), Query Frame = 3
Query:  198 VVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +VKA+KAEKKIAYD KLCQL++EYTQILV A DNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 163          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.512e-70
Identity = 134/164 (81.71%), Postives = 144/164 (87.80%), Query Frame = 3
Query:  195 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            M VKA+KAEKKI YD+KLCQLL EY+QILV A DNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.893e-70
Identity = 133/163 (81.60%), Postives = 144/163 (88.34%), Query Frame = 3
Query:  198 VVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +VKA+KAEKKIAYD KLCQL++EYTQILV A DNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 163          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.476e-68
Identity = 134/164 (81.71%), Postives = 140/164 (85.37%), Query Frame = 3
Query:  195 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            M  KA+KAEKKI YD KLCQLL+EYTQILV   DNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 251.906 bits (642), Expect = 2.317e-66
Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = 3
Query:  195 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            M +K +KAEKK+AYD KLCQLL+EYT++L+A  DNVGSNQLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 8.242e-64
Identity = 123/164 (75.00%), Postives = 138/164 (84.15%), Query Frame = 3
Query:  195 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            M +K +KAEKKIAYD KLC LL+EYT++L+A  DNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI
Sbjct:    1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.112e-63
Identity = 124/164 (75.61%), Postives = 134/164 (81.71%), Query Frame = 3
Query:  195 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ DNVGSNQLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI
Sbjct:    1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELI 164          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 81/163 (49.69%), Postives = 106/163 (65.03%), Query Frame = 3
Query:  198 VVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +V+ +KA  K  Y  K+ +L +EY +  +   DNVGS Q+QNIR  LRG  VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++
Sbjct:    1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPIL 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.014e-37
Identity = 80/163 (49.08%), Postives = 107/163 (65.64%), Query Frame = 3
Query:  198 VVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +V+ +KA  K  Y  K+ +L +E+ +  +   DNVGS Q+QNIR  LRG +VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++
Sbjct:    1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPIL 161          
The following BLAST results are available for this feature:
BLAST of DR406102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RLA0_SOYBN1.187e-7082.9360S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH2.025e-7082.2160S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH4.512e-7081.7160S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH5.893e-7081.6060S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_LUPLU2.476e-6881.7160S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ORYSJ2.317e-6675.0060S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE8.242e-6475.0060S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU9.112e-6375.6160S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA2.044e-3849.6960S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME1.014e-3749.0860S acidic ribosomal protein P0 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L17 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406102 ID=DR406102; Name=DR406102; organism=Citrus sinensis; type=EST; length=686bp
GGGGATTANNCTCGCAGATAATTCTAGGGTTTTTTCTTGTACACTTCTTT
CACTCTCTTTGTATCTCGTTGAGGTTAAAGAGACGGCAATTCCGCTGCTG
TCCGCCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAAT
TTACAACTTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTA
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATG
CCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCACCGACAACG
TGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCC
GTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCA
CGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTC
AGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAA
GAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGT
TGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCT
CCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAAG
GGTACTGTTGAAATTATCACACCTGTGGAGCTTATT
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