DR406062

Overview
NameDR406062
Unique NameDR406062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6306 contig Csv1_Contig6306:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 9.940e-72
Identity = 126/166 (75.90%), Postives = 152/166 (91.57%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            MA+N+LV+GGAGYIGSHTVLQLLLGGY  VVVDNLDN+S +++ +VK+LA   G+ ++FH++DLRD++ALE +F++TKF AVIHFAGL+AVGESV+KPLLY++NNL+GTITLLEVMA HGCKNLVFSSSATVYG PK VPCTEEFP+ A+NPYGRTKLFIEEICRD
Sbjct:    2 MARNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRD 167          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.443e-71
Identity = 130/165 (78.79%), Postives = 145/165 (87.88%), Query Frame = 3
Query:  162 AKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            ++ +LVTGGAGYIGSHTVLQLLLGG+K VVVDNLDN+SE A+ +VKELAG    N++FHKLDLRD+ ALE +F+ TKF +VIHFAGL+AVGESVQKPLLY+DNNLIGTI L EVMAAHGCK LVFSSSATVYG PK VPCTEEFPL A NPYGRTKL IEEICRD
Sbjct:    3 SQTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSETAIHRVKELAGKFAGNLSFHKLDLRDRDALEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGLPKEVPCTEEFPLSAANPYGRTKLIIEEICRD 167          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.303e-70
Identity = 123/166 (74.10%), Postives = 148/166 (89.16%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            MAK++LVTGGAGYIGSHTVLQLL GGY  VVVDN DN+S  ++ +VK+LAG  G+ ++FH++DLRD+ ALE +F++TKF AVIHFAGL+AVGESV+KPLLY++NN++GT+TLLEVMA +GCKNLVFSSSATVYGWPK VPCTEE P+ A NPYGRTKLFIEEICRD
Sbjct:    1 MAKSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRD 166          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.082e-53
Identity = 103/166 (62.05%), Postives = 128/166 (77.11%), Query Frame = 3
Query:  162 AKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-NQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            ++ ILVTG AG+IG+HTV+QLL  G+   ++DN DN+   AV +V+E+ G N   N+ F   DLR+K  LE LF+K+KF AVIHFAGL+AVGESV+ P  YFDNNL+GTI L EVMA H CK +VFSSSATVYG P+ +PC E+F L+AMNPYGRTKLF+EEI RD
Sbjct:    5 SQKILVTGSAGFIGTHTVVQLLNNGFNVSIIDNFDNSVMEAVERVREVVGSNLSQNLEFTLGDLRNKDDLEKLFSKSKFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYEVMAKHNCKKMVFSSSATVYGQPEKIPCVEDFKLQAMNPYGRTKLFLEEIARD 170          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.350e-52
Identity = 102/168 (60.71%), Postives = 130/168 (77.38%), Query Frame = 3
Query:  156 SMAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-NQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            S+ +NILVTGGAG+IG+HTV+QLL  G+K  ++DN DN+   AV +V+EL G +    + F+  DLR+K  +E LF+K +F AVIHFAGL+AVGESV+ P  YFDNNL+GTI L E MA + CK +VFSSSATVYG P+ +PC E+F L+AMNPYGRTKLF+EEI RD
Sbjct:    4 SVEQNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVDRVRELVGPDLSKKLDFNLGDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYETMAKYNCKMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIARD 171          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 94/162 (58.02%), Postives = 122/162 (75.31%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            ILVTGGAGYIGSHT ++LL  GY+ VV+DNL N+S  A+ +VKE+ G    ++TF++ DL D+ A++++FA+ +  AVIHFAGL+AVGESV  PL Y+ NNL GT  L E M  +G K +VFSSSATVYG P+  P TE+FPL A NPYG+TKL +E+I RD
Sbjct:    3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGK---DLTFYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIVFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRD 161          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.888e-46
Identity = 97/174 (55.75%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  138 LVSPLDSMAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQ-GDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            +VS   +  + ILVTGGAG+IGSHTV+QLL  G+   ++DNL N+   AV +V+ L G     N+ FH  DLR+   L+ LF+KTKF AVIHFAGL+ VGESV  P  Y+DNNL+ TI L +VM+   CK LV SSSATVYG P  +PC E+  L AMNPYGR+KLF+EE+ RD
Sbjct:    1 MVSSRMASGETILVTGGAGFIGSHTVVQLLKQGFHVSIIDNLYNSVIDAVHRVRLLVGPLLSSNLHFHHGDLRNIHDLDILFSKTKFDAVIHFAGLKGVGESVLNPSNYYDNNLVATINLFQVMSKFNCKKLVISSSATVYGQPDQIPCVEDSNLHAMNPYGRSKLFVEEVARD 174          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.649e-45
Identity = 91/172 (52.91%), Postives = 123/172 (71.51%), Query Frame = 3
Query:  141 VSPLDSMAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            + P+D     I+VTGGAGYIGSHTV++L+  GY  V+VDNL N+S  A+ +V+ + G +   + FH +D+ ++ AL+ +F      +VIHFAGL+AVGES + PL Y++NN+ GT+TLL +M  H  K LVFSSSATVYG P  VP TE+FPL A NPYGRTKL++E I +D
Sbjct:    1 MEPIDD---RIMVTGGAGYIGSHTVIELIEAGYTPVIVDNLSNSSLEAIKRVESITGKE---IEFHHVDIMNEKALDEIFETGNIRSVIHFAGLKAVGESNKLPLKYYNNNIAGTLTLLNLMDKHRVKKLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLYVEGILQD 166          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.353e-44
Identity = 99/173 (57.23%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            MA+ +LVTGGAGYIGSHTVL+LL  GY  VV+DN  NA         ++ +V+EL G    ++ F ++D+ D+ AL+ LF K  F AVIHFAGL+AVGESVQKPL Y+  NL GTI LLE+M AHG KNLVFSSSATVYG P+ +P  E  P     NPYG++K FIEE+ RD
Sbjct:    1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR---SVEFEEMDILDQGALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRD 170          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.353e-44
Identity = 99/173 (57.23%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            MA+ +LVTGGAGYIGSHTVL+LL  GY  VV+DN  NA         ++ +V+EL G    ++ F ++D+ D+ AL+ LF K  F AVIHFAGL+AVGESVQKPL Y+  NL GTI LLE+M AHG KNLVFSSSATVYG P+ +P  E  P     NPYG++K FIEE+ RD
Sbjct:    1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR---SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRD 170          
The following BLAST results are available for this feature:
BLAST of DR406062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GALE2_ARATH9.940e-7275.90UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE2_CYATE6.443e-7178.79UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE3_ARATH9.303e-7074.10UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE1_PEA2.082e-5362.05UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE1_ARATH1.350e-5260.71UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE_BACSU1.445e-4658.02UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE1_CYATE1.888e-4655.75UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE_DICDI4.649e-4552.91UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GALE_PONAB1.353e-4457.23UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]
GALE_HUMAN1.353e-4457.23UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248J17 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248J17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406062 ID=DR406062; Name=DR406062; organism=Citrus sinensis; type=EST; length=658bp
GGGGGTCAGTTTCATTTTTTTCTTTTCCTTTAAATTTCTCTGAGCGAGGC
CAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAAATT
TTCGTGTACTTTGTGCCCTTTTTTTTGGTTCTTCTGATTGGTCTCTCCGT
TAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACATT
GGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTCGT
CGTCGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAAAG
AACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATCTC
CGGGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGGTGC
TGTCATCCATTTTGCTGGACTGGAAGCAGTTGGTGAAAGTGTGCAGAAAC
CATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGGAA
GTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCTAC
TGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTTAG
AGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTTGC
CGTGATGT
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