DR406057

Overview
NameDR406057
Unique NameDR406057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:148..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406057 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.455e-46
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 3
Query:  141 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPTKLPEMLLNHKVRAH 431
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDP +L EMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DR406057 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.199e-19
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  141 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPTKLPEMLLNHKVRA 428
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID  +L EMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DR406057 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.576e-18
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  141 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPTKLPEMLLNHKVRA 428
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID   L EM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DR406057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI7.455e-4694.85Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.199e-1950.96Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI6.576e-1849.04Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248J12 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248J12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406057 ID=DR406057; Name=DR406057; organism=Citrus sinensis; type=EST; length=588bp
GGGGACAAAGAGAGCGNNNCTCTAGCTTTTGCCTATAGCTACTGCAGGAG
CANNNTCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCTAG
CTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCGCT
CTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCG
CTCTCCATTGGAAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAACCAT
ATCTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGCGGTGAGAG
AGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTAC
TACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAACAAAGCTTCCAGA
GATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCGCGCATA
ACACCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAGTGATGTTG
TTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTGTTGTATTGATA
TCGACTGTTATTGACAACTTTTAATAGTGCATTTCCAT
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