DR406026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CITSI (DNA-directed RNA polymerase subunit beta OS=Citrus sinensis GN=rpoB PE=3 SV=1) HSP 1 Score: 445.662 bits (1145), Expect = 1.046e-124 Identity = 219/222 (98.65%), Postives = 219/222 (98.65%), Query Frame = 2 Query: 5 RLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 RLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYI QKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 715 RLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SINAL (DNA-directed RNA polymerase subunit beta OS=Sinapis alba GN=rpoB PE=1 SV=2) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 722 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 944
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_OLIPU (DNA-directed RNA polymerase subunit beta OS=Olimarabidopsis pumila GN=rpoB PE=3 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LEPVR (DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum GN=rpoB PE=3 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CRUWA (DNA-directed RNA polymerase subunit beta OS=Crucihimalaya wallichii GN=rpoB PE=3 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CAPBU (DNA-directed RNA polymerase subunit beta OS=Capsella bursa-pastoris GN=rpoB PE=3 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_BARVE (DNA-directed RNA polymerase subunit beta OS=Barbarea verna GN=rpoB PE=3 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_AETCO (DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium GN=rpoB PE=3 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.846e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 717 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEKIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 939
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_DRANE (DNA-directed RNA polymerase subunit beta OS=Draba nemorosa GN=rpoB PE=3 SV=1) HSP 1 Score: 434.491 bits (1116), Expect = 2.411e-121 Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRWVQKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_EUCGG (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus GN=rpoB PE=3 SV=1) HSP 1 Score: 434.106 bits (1115), Expect = 3.149e-121 Identity = 210/221 (95.02%), Postives = 216/221 (97.74%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNGIVMLGSWVE GD+LVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGS+YNPETICVYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEAS+QTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 718 LLRNLDKNGIVMLGSWVEAGDVLVGKLTPQTAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSNYNPETICVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEASQQTANPWVFEPEYPGKSRIFDGRTGDPF 938 The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bpback to top |