DR406016

Overview
NameDR406016
Unique NameDR406016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:136..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406016 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.193e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPE 374
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPE
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPE 74          

HSP 2 Score: 47.7506 bits (112), Expect = 6.193e-43
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 2
Query:  374 DRAVEIDPAELREMLLNHKVRAH 442
            +RAVEIDPAELREMLLNHKVRAH
Sbjct:   75 NRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DR406016 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.983e-17
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPE 374
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPE
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPE 82          

HSP 2 Score: 33.8834 bits (76), Expect = 2.983e-17
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 2
Query:  386 EIDPAELREMLLNHKVRA 439
            EID AELREMLLNH+VR+
Sbjct:   87 EIDAAELREMLLNHRVRS 104          
BLAST of DR406016 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.992e-15
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPE 374
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPE
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPE 82          

HSP 2 Score: 31.9574 bits (71), Expect = 1.992e-15
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = 2
Query:  386 EIDPAELREMLLNHKVRA 439
            EID A+LREM+LNH+VR+
Sbjct:   87 EIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DR406016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI6.193e-43100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.983e-1751.22Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.992e-1550.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H12 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406016 ID=DR406016; Name=DR406016; organism=Citrus sinensis; type=EST; length=691bp
GGGGACAAGCACAGCACAACAGAGAGCGAGCCGCTAGCTTTTGCCTATAG
CTNNNGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAA
CATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAA
CAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCT
GATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACC
CTTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGC
CTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCC
ATCACTGGGTACTACAGGCCGGAGATCGGGCGGTCGAGATTGATCCAGCA
GAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGT
GGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTT
AAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTG
TTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATG
ATTTTGTCCATTAACTTGTCAATAAAAGTAAAGAATTCCTGTATTGCAAA
ATTACTTTTATATATTATATAGAGGGGTTATGCGGTCTGGG
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