DR406006

Overview
NameDR406006
Unique NameDR406006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:130..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406006 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.174e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 3
Query:  159 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKKDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 449
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEK DLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DR406006 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  159 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKKDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 446
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DR406006 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.097e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  159 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKKDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 446
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
BLAST of DR406006 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 3
Query:  159 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPL------GTISRTGIMEKKDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 437
            MARS    K+L A VADG S + +R G+AAAA        G  S  G M  K     VR   G   +W PDP+TGYYRPEN   EID A++R  +L  K
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVR--GGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKK 96          
The following BLAST results are available for this feature:
BLAST of DR406006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEA5_CITSI6.174e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.531e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.097e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
ARG2_PHAAU6.036e-1145.45Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406006 ID=DR406006; Name=DR406006; organism=Citrus sinensis; type=EST; length=678bp
GCCGGGGGCTCACAAGCACAGCACTAAGANNNCGANNNNCTAGCTTTTGC
CTATANNNACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTA
CAGAAACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAA
ATAAAACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCT
GTTGCTGATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGC
AGCACCCTTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAAGGATT
TGAGGCCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCA
GATCCCATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGA
TCCAGCAGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACT
AGGGAGTGGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTA
ACTTTTTAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTC
TTTGCTGTTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCAT
TTCCATGATTTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTACA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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