DR406000

Overview
NameDR406000
Unique NameDR406000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E ILREH+P    DTLALACGPP MIQFAVQPNLEKMNYDTK+SLLVF
Sbjct:  865 SVGFITENILREHIPAAAEDTLALACGPPAMIQFAVQPNLEKMNYDTKNSLLVF 918          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.722e-18
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            STGF+ EA+LREH+P     TLALACGPPPMIQFAV PNLEKM YD KDSLLVF
Sbjct:  856 STGFITEAVLREHIPLPSQTTLALACGPPPMIQFAVNPNLEKMGYDIKDSLLVF 909          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ EAILREH+P     TLALACGPPPMIQFAV PNLEKM YD KDSLLVF
Sbjct:  851 SIGFITEAILREHIPEPSHTTLALACGPPPMIQFAVNPNLEKMGYDIKDSLLVF 904          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.847e-17
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ EAILREH+P     TLALACGPPPMIQFAV PNLEKM YD KDSLLVF
Sbjct:  851 SLGFISEAILREHIPEPSHTTLALACGPPPMIQFAVNPNLEKMGYDIKDSLLVF 904          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.019e-17
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E I+REHVP    DTLALACGPPPMIQFA+ PNLEKM YD K+SLLVF
Sbjct:  867 SEGFITEDIMREHVPEVSEDTLALACGPPPMIQFAINPNLEKMGYDIKNSLLVF 920          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.019e-17
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXX-GDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            STGF+ EA+LREHVP    G++LALACGPPPMIQFA+QPNLEKM YD K+ LL+F
Sbjct:  857 STGFITEAVLREHVPEGLEGESLALACGPPPMIQFALQPNLEKMGYDIKEDLLIF 911          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.167e-17
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            STGF+ E+ILREH+P     TLALACGPPPMIQFA+ PNLEKM YD K+ LLVF
Sbjct:  858 STGFVTESILREHIPEPSHTTLALACGPPPMIQFAINPNLEKMGYDIKEELLVF 911          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E+IL EH+P    DTLAL CGPPPMIQFAVQPNLEK+ YDT+++LLVF
Sbjct:  837 SVGFITESILTEHIPNASPDTLALTCGPPPMIQFAVQPNLEKLGYDTQNNLLVF 890          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E+IL EH+P    DTLAL CGPPPMIQFAVQPNLEK+ YDT+++LLVF
Sbjct:  833 SVGFITESILTEHIPNASPDTLALTCGPPPMIQFAVQPNLEKLGYDTQNNLLVF 886          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E+ILREHVP    DTLAL CGPPPMIQFAVQPNLEK+ YD ++ LLVF
Sbjct:  828 SVGFITESILREHVPLASPDTLALTCGPPPMIQFAVQPNLEKLGYDIQNDLLVF 881          
The following BLAST results are available for this feature:
BLAST of DR406000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIA_CUCMA2.850e-1879.63Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA_PETHY3.722e-1877.78Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA2_TOBAC1.414e-1777.78Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA1_TOBAC1.847e-1777.78Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA_CICIN7.019e-1774.07Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA1_BRANA7.019e-1772.73Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_SOLLC9.167e-1772.22Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA2_SOYBN1.564e-1670.37Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_SOYBN1.564e-1670.37Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA1_PHAVU1.564e-1672.22Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G19 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406000 ID=DR406000; Name=DR406000; organism=Citrus sinensis; type=EST; length=387bp
GGGACAGTACGGGATTCCTTATAGAAGCAATCCTCAGGGAGCACGTCCCA
NNNGNNNCAGGCGATACTCTTGCATTGGCGTGTGGGCCTCCTCCGATGAT
TCAATTTGCCGTGCAGCCGAATTTGGAGAAAATGAACTACGATACCAAGG
ATTCGTTGCTGGTGTTTTAAATTAAACGCTGGGGGCAAGCACAGACGACG
ATACCAGCCGAGGTTGTACATATTTAAACGTCGAAGTTTTCAGCAGCAGT
TAAGTACTGCGTCACTCTATAGAGTCTATAAATAAATTCTCCCCGATCAA
TAACAAAAAAAAAAAAAATAAAAAATTAAAAATAAAAAAAAAAAAAAAAA
AAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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