DR405987

Overview
NameDR405987
Unique NameDR405987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:254..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405987 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.377e-12
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 2 
Query:    5 KKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 151
            KKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   18 KKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64
The following BLAST results are available for this feature:
BLAST of DR405987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MT3_CARPA1.377e-1263.27Metallothionein-like protein type 3 OS=Carica papa... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405987 ID=DR405987; Name=DR405987; organism=Citrus sinensis; type=EST; length=463bp
GGGGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGA
GCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAA
GGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGG
TAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTG
TGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAA
AAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTG
GAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCC
TTCTTCATAATCATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTG
TGGTTTAATTTTAATGTATTATTGTTAGTCTACTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
back to top