DR405946

Overview
NameDR405946
Unique NameDR405946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:2..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.691e-65
Identity = 122/142 (85.92%), Postives = 134/142 (94.37%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN*IK 629
            MANAASGMAVHDDCKLKFLELKAKRTYRFI++KIEEKQK+V+VEKLGEPT++YEDFTA LPA+ECRYAVYD+DF+T EN QKSRIFFIA SPDTARVRSKMIYA SKDRFKRELDGIQVELQATDP+EMGLDVF+ RA  I+
Sbjct:    1 MANAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRAGGIE 142          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.096e-64
Identity = 120/139 (86.33%), Postives = 130/139 (93.53%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+GEPT++YEDF ASLP  ECRYAVYD+DFVTAENCQKSRIFFIA  PDTARVRSKMIYA SKDRFKRELDGIQVELQA DP+EMGLDV + RAN
Sbjct:    1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.699e-63
Identity = 118/139 (84.89%), Postives = 128/139 (92.09%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQVIVEK+GEP  TYEDF ASLPA+ECRYA+YD+DFVTAENCQKS+IFFIA  PD A+VRSKMIYA SKDRFKRELDGIQVELQATDP+EM LDV K R N
Sbjct:    1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.699e-63
Identity = 116/139 (83.45%), Postives = 130/139 (93.53%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+G+P QTYE+F A LPA+ECRYA+YD+DFVTAENCQKS+IFFIA  PD A+VRSKMIYA SKDRFKRELDGIQVELQATDP+EM LDVF+ RAN
Sbjct:    1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.527e-61
Identity = 115/139 (82.73%), Postives = 128/139 (92.09%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MANAASGMAVHDDCKLKF+ELKAKRT+R IV+KIE+KQ  VIVEKLGEP Q+Y+DF ASLPA++CRY +YD+DFVTAENCQKS+IFFIA SPDTA+VR KMIYA SKDRFKRELDGIQVELQATDP+EMGLDVFK R N
Sbjct:    1 MANAASGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQ--VIVEKLGEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.629e-61
Identity = 112/139 (80.58%), Postives = 127/139 (91.37%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MANAASGMAV D+CKLKFLELKAKRTYRFI++KI+EK+K V+VEK+GEP   Y+DF ASLPA ECRYA++DYDFVT ENCQKS+IFFIA SPDT+RVRSKMIYA SKDRFKRELDGIQVELQATDP+E+GLDV + RAN
Sbjct:    1 MANAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.793e-60
Identity = 112/139 (80.58%), Postives = 127/139 (91.37%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MANAASGMAVHDDCKLKF+ELK KRT+RFI++KIEE QKQVIVEK+GEP QT+ED  ASLPA+ECRYA++D+DFV++E   +SRIFF+A SPDTARVRSKMIYA SKDRFKRELDGIQVELQATDP+EM LDVFK RAN
Sbjct:    1 MANAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.088e-59
Identity = 109/139 (78.42%), Postives = 123/139 (88.49%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MAN+ASGM V D+CKLKFLELKAKR YRFIVFKI+EK +QV+++KLG P +TYEDFT S+P +ECRYAVYDYDF T ENCQKS+IFFIA SPDT+RVRSKM+YA SKDRFKRELDGIQVELQATDPSEM LD+ K R N
Sbjct:    1 MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.607e-58
Identity = 105/139 (75.54%), Postives = 125/139 (89.93%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            MAN+ASGM V+D+CK+KFLELKAKRTYRFIVFKI+EK +QV +EKLG P +TY+DFT+S+P +ECRYAVYD+DF T +NCQKS+IFFIA SPDT+RVRSKM+YA SKDRFKRE++GIQVELQATDPSEM LD+ K R N
Sbjct:    1 MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57
Identity = 104/138 (75.36%), Postives = 127/138 (92.03%), Query Frame = 3
Query:  204 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 617
            M+N+ASGMAV D+CKLKFLELKAKR++RFIVFKI EK +QV+V++LG+P ++Y+DFTA LPA+ECRYAV+D+DFVT ENCQKS+IFFI+ +PDT+RVRSKM+YA SKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:    1 MSNSASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
The following BLAST results are available for this feature:
BLAST of DR405946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ADF2_PETHY1.691e-6585.92Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_PETHY1.096e-6486.33Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF4_ARATH2.699e-6384.89Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ARATH2.699e-6383.45Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF2_ARATH2.527e-6182.73Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF7_ORYSJ5.629e-6180.58Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF3_ARATH2.793e-6080.58Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF10_ARATH3.088e-5978.42Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF8_ARATH7.607e-5875.54Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_ORYSJ4.931e-5775.36Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248E06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405946 ID=DR405946; Name=DR405946; organism=Citrus sinensis; type=EST; length=734bp
GGGAGTCACCAGTCAGATTTTTCATAATATTAANNNAGCAAAGCAAAAAG
AAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAAG
AGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCTT
CACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAA
ACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCT
AAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTA
AGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCA
ACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCCG
ATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAA
GCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAGC
AAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGG
CATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACG
TATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGA
GATTGTTTTTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTT
GTGGCGGCAGCTTGAATCTAACTGAATTATGATA
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