DR405942

Overview
NameDR405942
Unique NameDR405942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:433..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 3
Query:  159 TVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 311
            T  C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAIT
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAIT 54          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 3
Query:  159 TVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 311
            T  C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAIT
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAIT 54          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 3
Query:  144 MADGSTVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 311
            MAD ST TC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ IT
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVIT 55          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  156 STVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 311
            ST T V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y IT
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIIT 53          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  156 STVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 311
            ST T VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +T
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLT 53          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  144 MADGSTVTCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 308
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 3
Query:  156 STVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            ++ T ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:  159 TVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            + T ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:  159 TVTCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            + T ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  165 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVI 54          
The following BLAST results are available for this feature:
BLAST of DR405942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
LTI6B_ORYSJ8.766e-2082.35Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI8.766e-2082.35Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ3.331e-1976.79Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH1.653e-1875.00Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH2.820e-1873.08Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ1.003e-1571.43Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU2.234e-1564.71Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU2.470e-1466.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL2.470e-1466.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA2.312e-1264.71Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248E02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405942 ID=DR405942|Name=DR405942|organism=Citrus sinensis|type=EST|length=311bp
CGGCCGGGGATAAACAAAAATACCAANNNNAAATAACAAAAGCAGTTACT
CAAAACCTTAAACACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAA
TTTTATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCAG
ATGGAAGCACAGTAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCT
CCTCTTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTG
TTTGCTCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTT
ATGCCATCACC
back to top