DR405906

Overview
NameDR405906
Unique NameDR405906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11700 contig Csv1_Contig11700:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR405906 vs. ExPASy Swiss-Prot
Match: CQ061_BUFBG (UPF0451 protein C17orf61 homolog OS=Bufo bufo gargarizans PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 2 
Query:   38 IWHKIXXXXXXXXXXXXTYGAHGFK--PQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWAS 349
            +W ++             YGAHGF+   ++   KE+++T + YH +H+ AL+A P  + P + G LLT+GI+ FSGT Y  A   D   +  AP+GG   I  WA+
Sbjct:    6 VWGRLGAVSGALAVTAGAYGAHGFRRSDRDEYLKELFETGNRYHFLHSLALLAVPHCRRPLLAGSLLTSGIVLFSGTFYYQALSGDPTLTKAAPYGGTLLILGWAA 111
The following BLAST results are available for this feature:
BLAST of DR405906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CQ061_BUFBG2.843e-1335.85UPF0451 protein C17orf61 homolog OS=Bufo bufo garg... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248C07 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405906 ID=DR405906; Name=DR405906; organism=Citrus sinensis; type=EST; length=672bp
GGGGGAGAGAAGAAGAATTATTATGATGGATCCTGTGATCTGGCATAAAA
TTGCTGCTGTATCTGGAGTAGCTGCACTTGGTTTAGGCACCTATGGCGCC
CATGGCTTCAAGCCCCAAAACCCCTCTTTCAAAGAGGTATGGCAAACGGC
TTCTCTTTACCATTTGGTTCACACAGCTGCTTTGGTTGCTGCCCCTATCA
CTAAAAATCCCAACATTTTTGGAGGCCTTTTGACTGCCGGAATTCTAGCT
TTCTCTGGGACGTGCTATACTGTGGCATTCCTTGAGGACAGGAAGTACTC
TACTCTAGCGCCCTTTGGTGGCTTTGCCTTCATTGGAGCTTGGGCGAGCT
TGCTATTCTAAGGATTTGGTCTTTAGCTACGTCCTGTTGCTGCTTTGGTA
TCAAACAGATGCTGAAGGAATTTATTGGCATCGGTCTCTTATCACTGTTG
CTTCTGGTCTATGATGTGTATTATTTAACTATATTTTAGTATGCTCGAAT
GCCCCTTGTGTAACTTAATGGCCCTGTTAATGTCATATTTATTCCCAATA
AAGTCTGTTCGTGAAGATGAACACAACTTATTGTAATTTGTAAAGCAATA
CTCGTTGTGTGACAGTGTGAGCACTGAAAAAACAATACATACATAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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