DR405870

Overview
NameDR405870
Unique NameDR405870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:124..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  255 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG    A   DLL++P+
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPS--ATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPD 225          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  222 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            ++ IS       FE     RN     A GF+ Y++FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S +  +PC PG +Y+GRG I I +NYNYGA   A   +LL++P+
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQ--WPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPD 144          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  255 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S +  +PC  G  YYGRG + + WNYNYG    A  +DLL++P+
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAE--WPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPD 210          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 55/135 (40.74%), Postives = 76/135 (56.30%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +  YPC PG  YYGRG + + WNYNYG   EA   +LL +P+
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPD 141          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 57/136 (41.91%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG    A   DLL++P+
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPD 192          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 57/136 (41.91%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG    A   DLL++P+
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPD 214          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 54/135 (40.00%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NYG   +A   D L +PE
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPE 189          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  228 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S +  +PC PG  YYGRG I +  NYNYG    A   DLL++P+
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPD 164          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 56/135 (41.48%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG    A   DLL+ P+
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPD 214          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 56/135 (41.48%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG    A   DLL+ P+
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPD 213          
The following BLAST results are available for this feature:
BLAST of DR405870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHIB_ARATH1.686e-2640.44Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHID_SOLLC2.875e-2641.50Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_BRANA8.366e-2640.44Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA1.864e-2540.74Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI1.208e-2441.91Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.208e-2441.91Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI10_ORYSJ3.515e-2440.00Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_HORVU5.995e-2437.9326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIT_PHAVU7.830e-2441.48Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.023e-2341.48Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P24 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405870 ID=DR405870; Name=DR405870; organism=Citrus sinensis; type=EST; length=667bp
GGGAAGTGAATCTCGTAACAACAGGTAGATCTGGTGAGAACGAGAAAATA
AAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTACT
GGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATAG
TGAAGAAGGTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCCA
ACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGGT
TTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACATG
CCGTGGGCTTCTGGGATTATCAGTCTTTCATTACTGCCACCGTCAAATAT
CAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGGA
GATTTGCGCTTTTCTTGCCCACGTCGGCTGCAAGACCTCTTGTGGATATG
GGGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAA
ATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCC
CTGCACCCCTGGAGCTGAGTACTACGGCCGAGGTGCTATACCTATATACT
GGAACTATAACTATGGAGCTACTNNGGAAGCATTNNGGGCGGATCTGTTG
AGTCATCCTGAATACAT
back to top