DR405867

Overview
NameDR405867
Unique NameDR405867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:41..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.790e-104
Identity = 179/244 (73.36%), Postives = 210/244 (86.07%), Query Frame = 3
Query:   45 AASDRTVLQF----GPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            A S+ T+LQF      +SA TS +TA++HPLVIFN+ DC+VRRPD AERVIGTLLGS+LPDGTVDIRNSY VPHNE SDQVA+DI+YHH ML SHLKVN +E IVGW+STG GV GGS+LIH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDRQL A FQEIP+DLRM++AERVGFD+LK+TSVDKLP+DLEGME+ MERLLTLIND+YKYVD  V G   PDN++GR +++ VAS
Sbjct:    3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVAS 246          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.700e-43
Identity = 88/221 (39.82%), Postives = 135/221 (61.09%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETV 758
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLV 316          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.700e-43
Identity = 88/221 (39.82%), Postives = 135/221 (61.09%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETV 758
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLV 316          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.700e-43
Identity = 88/221 (39.82%), Postives = 135/221 (61.09%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETV 758
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V
Sbjct:   93 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLV 312          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 88/221 (39.82%), Postives = 136/221 (61.54%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETV 758
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDTG ++G  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLV 316          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 95/232 (40.95%), Postives = 133/232 (57.33%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+T +VHP+V+F + D Y RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVNP E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +    ++L  L++ I KYVDD +     PDN+VGR L + + S
Sbjct:    5 NLTVRVHPVVLFQVVDAYERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKT-VGVSPAHRPKTVPPMLDLAQISEASQKLQQLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHS 234          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 93/231 (40.26%), Postives = 133/231 (57.58%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST---SVDKLPS------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T   S  + P       DL  +    ++L +L++ I KYVDD +     PDN+VGR L + + S
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAQRPKTVPPMLDLAQISEASQKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHS 234          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.335e-41
Identity = 92/232 (39.66%), Postives = 133/232 (57.33%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+T +VHP+V+F + D + RR  ++ RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHS 234          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.335e-41
Identity = 92/232 (39.66%), Postives = 133/232 (57.33%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+T +VHP+V+F + D + RR  ++ RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHS 234          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_AEDAE (Eukaryotic translation initiation factor 3 subunit F OS=Aedes aegypti GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.188e-40
Identity = 93/232 (40.09%), Postives = 134/232 (57.76%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL-KSTSVDKLPS---------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   +    F  I +++   E E VG  +  K+  V +  S         DL  +    ++LLTL+ ++  YV+D +     PDNSVGR L + + S
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-DKGVVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLSAARMGIKAYVCVSLGVPGGKTGCMFTPINVEISSYEPEVVGLQLCSKTIGVQQNASRPRTVSPMLDLAQITEASDKLLTLLGEVLNYVEDVLAEKQQPDNSVGRALLDLIHS 239          
The following BLAST results are available for this feature:
BLAST of DR405867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
EIF3F_ARATH5.790e-10473.36Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR5.700e-4339.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA5.700e-4339.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN5.700e-4339.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE7.444e-4339.82Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN3.694e-4240.95Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR4.085e-4140.26Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS5.335e-4139.66Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE5.335e-4139.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_AEDAE1.188e-4040.09Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P18 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405867 ID=DR405867; Name=DR405867; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCGGCA
AGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTCGAA
TATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACTGTT
ACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTTGGC
TCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCC
TCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATA
CCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGA
TGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGA
ATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATACAG
GATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAATTTG
TCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAAGAAATCCCTCTTGA
TCTTCGAATGATTGAAGCTGAGCGAGTTGGATTCGATATTCTGAAGTCAA
CATCGGTTGACAAACTCCCTAGTGATTTGGAAGGAATGGAAGTCCTGATG
GAACGGCTACTAACTCTTATTAACGATATCTACAAATATGTTGATGACAC
TGTGGAAGGGCATGCTGTACCTGATAATAGTGTAGGGCGTATTCTTTCAG
AGACTGTAGCCTCCC
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