DR405863

Overview
NameDR405863
Unique NameDR405863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405863_ssr15 microsatellite DR405863_ssr15:15..29. BLAST: Citrus ESTs to Prunus persica proteins V1
DR405863_ssr111 microsatellite DR405863_ssr111:111..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6286 contig Csv1_Contig6286:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405863 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.695e-31
Identity = 64/117 (54.70%), Postives = 90/117 (76.92%), Query Frame = 3
Query:   33 NYEVFLNFRGEDTRRSFTCYLYDALNERKKIRTFIDDEGLGRGDEISDALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIVIPVFYGVSPSNVRHQEETFGNGFKE 383
            +Y+VFL+FRGEDTR++FT +LY+ LN+ K I+TF DD+ L  G  I   L  AI+ S+ ++V+FS++YA+S+WCLNELVKI+ECK    Q VIP+FY V PS+VR+Q+E+F   F+E
Sbjct:   11 SYDVFLSFRGEDTRKTFTSHLYEVLND-KGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEE 126          
BLAST of DR405863 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    6 MAXXXXXXGNYEVFLNFRGEDTRRSFTCYLYDALNERKKIRTFIDDEGLGRGDEISDALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIVIPVFYGVSPSNVRHQEETFGNGFKE 383
            MA        Y+VF +FRGED R +F  +L     E K I TF DD  + R   I   L  AI+ SKISVV+FS++YASS WCL+EL++I++CK   G  V+PVFY V PS++R Q   FG  F E
Sbjct:    1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEF-ESKGIVTFRDDH-IKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLE 124          
BLAST of DR405863 vs. ExPASy Swiss-Prot
Match: P2A08_ARATH (Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.117e-20
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   39 EVFLNFRGEDTRRSFTCYLYDALNERKKIRTFIDDEGLGRGDEISDALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIVIPVFYGVSPSNVRHQEETFGNGFKELKKTVRREGRNGSEVEECTD 443
            +VF+NFRG+D R  F  +L  A+ E   I  FID + +   D ++  L   IQ S+++VVIFSKDY SS+WCL+EL +I +C N  G   IP+FY ++PS+V   +  FG+ F+ LK+  + +     + +E  +
Sbjct:   15 QVFINFRGKDLRNGFLSFLEPAMREAN-INVFIDKDEVVGTDLVN--LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQEALE 146          
BLAST of DR405863 vs. ExPASy Swiss-Prot
Match: P2A06_ARATH (Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   39 EVFLNFRGEDTRRSFTCYLYDALNERKKIRTFIDDEGLGRGDEISDALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIVIPVFYGVSPSNVRHQEETFGNGFKELKKTVR 401
            +VF+ FRG D R+ F  +L  AL E   I  FID+     G E+++ LL  I+ S++++VIFS D+  S  CLNEL KI E K+    IVIP+FY V PS V+  E  FG+ F+ L++  R
Sbjct:   16 QVFICFRGADVRKHFISFLVPALREAN-INVFIDENEF-LGSEMAN-LLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNR 133          
BLAST of DR405863 vs. ExPASy Swiss-Prot
Match: P2A05_ARATH (Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-16
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 3
Query:   39 EVFLNFRGEDTRRSFTCYLYDALNERKKIRTFIDDEGLGRGDEISDALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIVIPVFYGVSPSNVRHQEETFGNGFKEL 386
            +VF+NFRG+D R+ F  +L  AL +++KI  FID++   RG  +  +L + I  SKI++VIFS+ Y  S WC++ELVKI E  + N  I+IP+FY +    V+     FG+ F +L
Sbjct:   23 QVFINFRGKDLRKGFMSFLKPAL-KKEKINVFIDEQE-ERGKYLI-SLFDTIGESKIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDL 135          
The following BLAST results are available for this feature:
BLAST of DR405863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TMVRN_NICGU6.695e-3154.70TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
Y4117_ARATH3.330e-2247.62Putative disease resistance protein At4g11170 OS=A... [more]
P2A08_ARATH3.117e-2039.26Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis th... [more]
P2A06_ARATH4.213e-1743.80Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis th... [more]
P2A05_ARATH2.731e-1642.24Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P12 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405863 ID=DR405863; Name=DR405863; organism=Citrus sinensis; type=EST; length=781bp
GGGGGATGGCTTCCTCTTCTTCTTCTTCTGGCAATTATGAAGTCTTCCTC
AACTTTAGAGGGGAGGACACTCGTAGGAGCTTTACTTGCTATCTCTATGA
TGCTTTGAATGAAAGAAAGAAAATCAGGACATTTATTGATGATGAAGGGC
TTGGGCGAGGAGATGAGATTTCAGATGCCCTATTGAACGCAATCCAAGGT
TCAAAAATTTCGGTGGTCATTTTCTCAAAGGACTACGCTTCTTCAAAATG
GTGCCTGAATGAACTTGTCAAGATTCTTGAATGCAAGAACACAAACGGCC
AAATCGTTATTCCAGTTTTCTATGGCGTCAGTCCATCCAATGTGCGGCAT
CAAGAGGAAACTTTTGGAAACGGTTTTAAAGAGCTCAAAAAAACAGTTCG
AAGAGAAGGCAGAAATGGTTCTGAAGTGGAAGAATGCACTGACAGGTACA
TCCCATCTAGCTGGCCTAGAATCCACGAAATTCAGGAACAATATATTGTT
TCTTGGTAGGCTTGCAACATTCAAGAGTATTCTAGTTTGCTTTCGTCGAT
GCACAACGCAAGCAAACAAACAAGTGCTTCATTGTATCCTGGAGGCGTAT
TTGCTTAACCCATGTGCATCACTCAATTGGTGGGGGCAAATAACGTCTTA
AGTAAAGCGACATTTGTAACGTGCCTTGAAGCACACAAAATTTCTGCAGT
TTCTTCCTACATACAGAGCTAGTTGTAAACACATTATTTTATATAATAAA
GTTCCACCATTATTGTTATAAAAAAAAAAAA
back to top