EY728858

Overview
NameEY728858
Unique NameEY728858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8183 contig Csv1_Contig8183:1..533. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: ACOR_RALEH (Acetoin catabolism regulatory protein OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoR PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.326e-27
Identity = 69/164 (42.07%), Postives = 92/164 (56.10%), Query Frame = -3
Query:   64 VEDGSFREDLYYRLNGLEIALPPLRERSDKSQLLDFLLAEETGD-QPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVI-----RQARPQPAVVEDRSDSPLD----DAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 525
            V DG FREDLYYRLNG    LPPLR R+D   L+  LL E + +   + L   AR+ L    WPGN+R+LR VL    A+C DG I + DLP  +       A PQP   +  + +P D      E + L+  L    W++S  A Q+GVSR TLYR++ ++GI
Sbjct:  490 VADGRFREDLYYRLNGARFTLPPLRARTDLDWLVRKLLQEGSAEGSEITLSPAARERLHRHRWPGNLRELRNVLEYARAVCADGYIDVPDLPDSLAGPAPSAALPQPGPAQSPAAAPFDPHQLPPEGMLLMQYLRASGWNLSAVARQIGVSRMTLYRRMERYGI 653          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: PILR_PSEAE (Type 4 fimbriae expression regulatory protein pilR OS=Pseudomonas aeruginosa GN=pilR PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = -3
Query:   64 GSFREDLYYRLNGLEIALPPLRERSDKSQLLD----FLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRI-----GLEDLPAVIRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 516
            G FR+DLYYRLN +E+ +PPLRER +   LL       LA +TG     L   A++ L  + +PGNVR+L  +L     LC+D +I      L D P   ++     + +++  D  L+D ER  ++ ALE+ RW+ +  A++LG++  ++  +L+K GI
Sbjct:  286 GRFRQDLYYRLNVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDY-LEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGI 444          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: ANFA_AZOVI (Nitrogen fixation protein anfA OS=Azotobacter vinelandii GN=anfA PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 55/161 (34.16%), Postives = 86/161 (53.42%), Query Frame = -3
Query:   61 ERVEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLDFLLA---EETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIA 531
            E VE G+FREDLYYRLN   I +PPLRER SD   L D  ++    E G     + +PA   L+++ WPGNVR+L  V+     L DD  I   +LP  ++ ++          +  +   E   ++ AL+    H+   A++LG++R  L  ++ ++GI+
Sbjct:  365 EMVEQGTFREDLYYRLNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERAVILSDDDVIHSYNLPPSLQTSKESGTAFGLTLEEKIKAVECEMIVEALKNSSGHIGEAAKELGLARRMLGVRMERYGIS 525          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: ATOC_ECOLI (Acetoacetate metabolism regulatory protein atoC OS=Escherichia coli (strain K12) GN=atoC PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 60/164 (36.59%), Postives = 90/164 (54.88%), Query Frame = -3
Query:   64 VEDGSFREDLYYRLNGLEIALPPLRERSDKSQLL--DFL--LAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQ-----ARPQPAVVEDRS-DSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 525
            V++G+FREDL+YRLN + + LPPLR+R +   LL   FL   + E     + +D  A   L A++WPGN+R+L  V+     +     I  EDLP  IRQ        + A V +R+    +   E+  ++  LEQQ  + + TA  LG+SR  L  KL+++GI
Sbjct:  293 VKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: HOXA_RALEH (Hydrogenase transcriptional regulatory protein hoxA OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.845e-18
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = -3
Query:   64 VEDGSFREDLYYRLNGLEIALPPLRERSDKSQLLDFLLAEETGDQ----PVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIG--------LEDLPAVIR-----QARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 525
            V  G FREDLYYR+ G+ I++PPLRERS   Q +   L E+   +     +     A  A++A+ WPGN+R+LR  +    AL     I         L   P  ++     Q  PQ   +++R    LD  E + L  AL + RW+ +H A++LG+SR  L +KL + G+
Sbjct:  313 VHAGRFREDLYYRIAGVTISMPPLRERSGDLQPIAAKLLEQVAQELARPGLYFGGDALAAMMAYPWPGNIRELRNEIYRAVALSSGEEIRAQLFSRKVLHGQPGTVKRGPHVQTFPQSGTLQER----LDAIEAVVLKEALLRHRWNKTHAAKELGLSRVGLRQKLLRFGL 479          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NTRC_PROVU (Nitrogen regulation protein NR(I) OS=Proteus vulgaris GN=ntrC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.368e-18
Identity = 65/184 (35.33%), Postives = 92/184 (50.00%), Query Frame = -3
Query:   64 ERVEDGSFREDLYYRLNGLEIALPPLRERS-DKSQLLDFLL---AEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVE--------------------DRSDSPLDDA----ERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 531
            +RV +G FREDLY+RLN + I LPPLR+R+ D   L  + L   A+E G +   L   + + ++ + W GNVRQL  V R L  +     I  +DLP+ IR A  +   +                     +  ++ L+DA    ER  LL+AL   + H    A  LG  RNTL RKL++ GI
Sbjct:  287 KRVNEGDFREDLYHRLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQLENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGKENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGI 470          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NIFA_AZOVI (Nif-specific regulatory protein OS=Azotobacter vinelandii GN=nifA PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.368e-18
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = -3
Query:   85 VEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLDFLLAEETGDQ--PVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRI--GLEDLPAVIRQARPQPAVVED--RSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVS-RNTLYR 525
            VE G FREDLYYRLN + I +PPLRER +D  +L +FLL +    Q  P+ +   A + L++  WPGNVR+L   L   A + +DG I   +  L  V  ++ P  A + +   +D  LDD ER  ++ ALEQ  W  +  A  LG++ R   YR
Sbjct:  359 VEKGKFREDLYYRLNVMAIRIPPLRERTADIPELAEFLLGKIGRQQGRPLTVTDSAIRLLMSHRWPGNVRELENCLERSAIMSEDGTITRDVVSLTGVDNESPPLAAPLPEVNLADETLDDRER--VIAALEQAGWVQAKAARLLGMTPRQIAYR 511          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NTRC_ECOLI (Nitrogen regulation protein NR(I) OS=Escherichia coli (strain K12) GN=glnG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.040e-17
Identity = 61/183 (33.33%), Postives = 85/183 (46.45%), Query Frame = -3
Query:   64 ERVEDGSFREDLYYRLNGLEIALPPLRERSDKSQLL--DFL--LAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDS-----------------------PLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 531
            +RV++G FREDL++RLN + + LPPLRER +    L   FL   A E G +  LL      AL   AWPGNVRQL    R L  +     + ++DLP  + ++    +  + + DS                          + ER  L  AL   + H    A  LG  RNTL RKL++ G+
Sbjct:  286 QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NTRC_ECO57 (Nitrogen regulation protein NR(I) OS=Escherichia coli O157:H7 GN=glnG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.040e-17
Identity = 61/183 (33.33%), Postives = 85/183 (46.45%), Query Frame = -3
Query:   64 ERVEDGSFREDLYYRLNGLEIALPPLRERSDKSQLL--DFL--LAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDS-----------------------PLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 531
            +RV++G FREDL++RLN + + LPPLRER +    L   FL   A E G +  LL      AL   AWPGNVRQL    R L  +     + ++DLP  + ++    +  + + DS                          + ER  L  AL   + H    A  LG  RNTL RKL++ G+
Sbjct:  286 QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NTRC_SALTY (Nitrogen regulation protein NR(I) OS=Salmonella typhimurium GN=glnG PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.751e-17
Identity = 63/182 (34.62%), Postives = 82/182 (45.05%), Query Frame = -3
Query:   64 RVEDGSFREDLYYRLNGLEIALPPLRERSDKSQLL--DFL--LAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDS-----------------------PLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 528
            RV++G FREDL++RLN + I LPPLRER +    L   FL   A E G +  LL      AL   AWPGNVRQL    R L  +     + ++DLP  + +A    +      DS                          + ER  L  AL   + H    A  LG  RNTL RKL++ G+
Sbjct:  287 RVQEGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFEASTPDSPSHLPPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468          
The following BLAST results are available for this feature:
BLAST of EY728858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ACOR_RALEH6.326e-2742.07Acetoin catabolism regulatory protein OS=Ralstonia... [more]
PILR_PSEAE2.179e-1935.63Type 4 fimbriae expression regulatory protein pilR... [more]
ANFA_AZOVI2.179e-1934.16Nitrogen fixation protein anfA OS=Azotobacter vine... [more]
ATOC_ECOLI6.341e-1936.59Acetoacetate metabolism regulatory protein atoC OS... [more]
HOXA_RALEH1.845e-1834.50Hydrogenase transcriptional regulatory protein hox... [more]
NTRC_PROVU5.368e-1835.33Nitrogen regulation protein NR(I) OS=Proteus vulga... [more]
NIFA_AZOVI5.368e-1840.00Nif-specific regulatory protein OS=Azotobacter vin... [more]
NTRC_ECOLI2.040e-1733.33Nitrogen regulation protein NR(I) OS=Escherichia c... [more]
NTRC_ECO572.040e-1733.33Nitrogen regulation protein NR(I) OS=Escherichia c... [more]
NTRC_SALTY7.751e-1734.62Nitrogen regulation protein NR(I) OS=Salmonella ty... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728858 ID=EY728858; Name=EY728858; organism=Citrus sinensis; type=EST; length=533bp
CTCGTAAAACATCGAGGCAGGTTAGCGTAGGGTGGGAAAAATCGCACCCT
TTAGCTAACGGGCGATCCCGTGTTTGCGCAGTTTTCTATACAAGGTGTTA
CGGCTAACCCCCAGTTGCTCCGCCGTGTGGCTCATGTGCCAGCGCTGTTG
CTCCAAGGCATTGAGCAGCGCCAGGCGCTCTGCATCGTCCAAGGGCGAAT
CCGAACGGTCCTCCACTACTGCCGGCTGCGGGCGCGCCTGGCGAATGACC
GCCGGCAGGTCCTCGAGCCCAATCCGTCCGTCGTCACACAATGCCGCCAA
CGTGCGCAGCACCGTGCGCAACTGCCGTACATTGCCCGGCCAGGCAAATG
CCAACAGTGCCTGACGCGCAGGGCTGTCGAGCAACACCGGCTGGTCGCCC
GTCTCCTCAGCCAATAGAAAGTCGAGCAGTTGCGACTTATCGCTGCGCTC
ACGCAACGGCGGCAGGGCGATTTCCAGACCGTTCAGCCGGTAGTACAGGT
CTTCGCGAAAACTGCCGTCCTCTACCCGCTCCA
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