DR405284

Overview
NameDR405284
Unique NameDR405284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2583 contig Csv1_Contig2583:35..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405284 vs. ExPASy Swiss-Prot
Match: GUAD_BACSU (Guanine deaminase OS=Bacillus subtilis GN=guaD PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  211 KLVEEAYKGVECGXGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVREACKKLNKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 495
            + V  A +GV  G GGPFGA             N V    DPTAHAEVTA+R+ACK L   +L DC +Y SCEPCPMC GAI+ +R K + Y A+
Sbjct:    9 RAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE 103
[Close]
BLAST of DR405284 vs. ExPASy Swiss-Prot
Match: TADA_AQUAE (tRNA-specific adenosine deaminase OS=Aquifex aeolicus GN=tadA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:  217 VEEAYKGVECGXGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVREACKKLNKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 492
            + EA +  E G   P GA            HN V +  DPTAHAE+ A++EAC++LN   L  CE+Y + EPC MC  A+ LSRI+++++ A
Sbjct:   11 LREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSA 101
The following BLAST results are available for this feature:
BLAST of DR405284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GUAD_BACSU8.080e-2049.47Guanine deaminase OS=Bacillus subtilis GN=guaD PE=... [more]
TADA_AQUAE9.567e-1341.30tRNA-specific adenosine deaminase OS=Aquifex aeoli... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAB-PNP1240P18 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240P18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405284 ID=DR405284; Name=DR405284; organism=Citrus sinensis; type=EST; length=628bp
GGGGCTTGCGCAGCACAGCACCGATTCTGATTTGTTTTCAACTTCTGTTT
TGGAGTCACAACTCACAACATCGACGACATTCATTCACTTCATCAACAAT
AACAACAACATGGAGGAAGCTAATGTGGTGGAAACTAAGGATGGAACTAT
TTCTGTGGCTTCTGCATTTGCTGCTCATCAGGAAGGATAGAGACCACGAG
TTCCTAAGTAAAGCTAGTTGAAGAAGCATATAAAGGAGTTGAATGTGGNN
NTGGAGGTCCTTTTGGTGCTGTTGTCGTACGTAGTGATGAAGTCGTTGTG
AGTTGTCATAACATGGTTTTGAAGCACACTGATCCTACTGCCCATGCTGA
GGTGACGGCAGTGAGAGAGGCTTGCAAAAAGCTCAATAAGATTGAGCTTT
CAGACTGCGAAATATACGCCTCCTGTGAGCCTTGCCCCATGTGCTTCGGG
GCTATCCACCTTTCACGAATCAAGAGGTTGGTTTATGGAGCCAAGGCTGA
AGCAGCCATTGCCATAGGATTTGATGATTTCATTGCAGATGCAATAAGGG
GAACTGGCTTCTATCAGAAGGCTCAGCTGGAGATCAAAAGAGCTGAAGGC
AATGGGGCAGCCATAGCAGAACAGGTCT
back to top