DR405276

Overview
NameDR405276
Unique NameDR405276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:312..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 234
            GPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   41 GPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.337e-32
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 225
            GPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:   41 GPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.692e-32
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 234
            GPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   40 GPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.714e-28
Identity = 57/77 (74.03%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 234
            GPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   47 GPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.307e-23
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 237
            GPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   41 GPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.307e-23
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 237
            GPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   41 GPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 234
            GPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:   39 GPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    7 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 219
            PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:   41 PCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.243e-20
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    7 PCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 237
            PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:   42 PCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of DR405276 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 6.527e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 225
            GPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   53 GPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
The following BLAST results are available for this feature:
BLAST of DR405276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TRXH_RICCO1.037e-3389.61Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH3.337e-3287.84Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC5.692e-3285.71Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.714e-2874.03Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_ORYSJ6.307e-2364.10Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI6.307e-2364.10Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_PICMA5.340e-2261.04Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH5_ARATH4.520e-2161.97Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA2.243e-2060.26Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_WHEAT6.527e-2060.81Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240P08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405276 ID=DR405276; Name=DR405276; organism=Citrus sinensis; type=EST; length=456bp
GGGGGACCATGCCGTTTCATTGCTCCATTCTTGGCAGAGCTGGCCAAGAA
ACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTG
TTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAA
GAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCA
GCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATGA
CTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTA
TCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGT
GTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTC
TTTACAATAATTTAATTTCATATTTGTTGTCACCAAAACCAAGAAAAAAA
AAAAAA
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