DR405268

Overview
NameDR405268
Unique NameDR405268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405268_ssr34 microsatellite DR405268_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3770 contig Csv1_Contig3770:5..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.204e-37
Identity = 106/219 (48.40%), Postives = 130/219 (59.36%), Query Frame = 3
Query:  126 MIVGQKMVAETEIICKATAVLDLGLQFNV-KDQ-NLQIDVNLKNKNSSPPSTPRFHELRVSDSVSSEISC------FESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDV-FLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            MI+ Q MVAE EI      VLD+    +  KDQ N QID                 E+RVS+SV +EIS       F S +SC   V +T+ E+++ F+P I SGS ADI  R +M+DEHI IDDLSAH GS +    PSAFY VFDGHGGPEAA+++KEN  +LFF+DA  P+   I D  FL ELENSH+K           E  VS +CGTTALTA
Sbjct:    1 MILSQTMVAEAEI-----RVLDVKCHISAPKDQKNFQID-----------------EVRVSESVRAEISGSAETPRFGSGMSC---VTTTIGESASDFIPTIRSGSFADIRSRETMEDEHICIDDLSAHLGS-YNFSVPSAFYGVFDGHGGPEAAIFMKENLTRLFFQDAVFPEMPSIVDAFFLEELENSHRKAFALADLAMADETIVSGSCGTTALTA 193          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.056e-36
Identity = 88/206 (42.72%), Postives = 124/206 (60.19%), Query Frame = 3
Query:  144 MVAETEIICKAT--AVLDLGLQFNVKDQNLQIDVNLKNKNSSPPSTPRFHELRVSDSVSSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            MVAE E++ + +  AVL++ L   V            +   SP S+P+    + + SVS  ++   S V      +     +   ++P I SGS ADIGP+ +M+DEHIRIDDLS+  GSLF+ P PSAFYAVFDGHGGPEAA YV+ENA++ FF+D   PQTS+++ V++ E+E S +            + S+S +CGTTALTA
Sbjct:    1 MVAEAEVVFQQSLPAVLEIELFDGVS-----------SAVKSPVSSPKLGFTQSTASVSGSLTT--SPVQADIFPEGDCDPSVLDYIPTIRSGSFADIGPKRNMEDEHIRIDDLSSQVGSLFELPKPSAFYAVFDGHGGPEAAAYVRENAIRFFFEDEQFPQTSEVSSVYVEEVETSLRNAFLQADLALAEDCSISDSCGTTALTA 193          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 90/184 (48.91%), Postives = 110/184 (59.78%), Query Frame = 3
Query:  231 IDVNLKNKNSSPPSTPRFHELRVSDSV------SSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGP-RISMDDEHIRIDDLSAHFGSLF-KCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQT-SDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            IDV      +  PS  +  E+R+ DS+      S E    ES+ SCS T   T+ E    FVP I SGS AD G  R  M+DEHI IDDLS H GS F + P P AFY VFDGHGG +A+ Y+KENAM LFF+DA   Q+ S ++ +FL ELE SH++           ER VSS+CGTTALTA
Sbjct:   55 IDVKSHLSVAKDPSNFQIAEIRIHDSICIDIPSSEETPLLESIKSCSAT---TIEEHVTEFVPNISSGSYADKGDYREYMEDEHICIDDLSDHLGSSFYRFPVPMAFYGVFDGHGGSDASQYIKENAMSLFFEDAVFRQSPSVVDSLFLKELETSHREAYRLADLAMEDERIVSSSCGTTALTA 235          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 3
Query:  393 FVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            FVP I SGS ADIGPR  M+DEHIRIDDLSAH GSL  CP PSAFY VFDGHGG +AA Y+K +AM+  F+D++ PQ S +++ ++  +ENS ++           +  +S + GTTALTA
Sbjct:   71 FVPSIRSGSFADIGPRRYMEDEHIRIDDLSAHLGSLLVCPLPSAFYGVFDGHGGLDAAAYMKRHAMRFLFEDSEFPQASQVDETYVQSVENSVRRAFLQADLALADDLDISRSSGTTALTA 191          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 3
Query:  333 ESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            E+ +   E +    +E S  F P I SGS ADIGPR  M+DEHIRIDDLS H GSL  CP P+AFY VFDGHGGP+AA Y+K +A++LFF+D++ PQ  + ++ F   +E S              + ++S + GTTAL A
Sbjct:   45 EAAIEVPELMVKAPVE-SLQFSPNIRSGSFADIGPRRYMEDEHIRIDDLSGHLGSLLMCPAPNAFYGVFDGHGGPDAAAYMKRHAIRLFFEDSEFPQALEEDESFYESVEKSIHNAFLSADLALADDLAISRSSGTTALAA 184          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 50/152 (32.89%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  300 SDSVSSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            S +   +++    V  C+  +KS  ++  + F+P+  SGSCA+ G +  M+DEHI IDDL  H G+  +C +  AFY VFDGHGG +AA +V++N ++   +D+  P            ++ + K            + S+  + GTTALTA
Sbjct:   50 SSATRLQLAANADVDVCNLVMKS--LDDKSEFLPVYRSGSCAEQGAKQFMEDEHICIDDLVNHLGAAIQCSSLGAFYGVFDGHGGTDAAHFVRKNILRFIVEDSSFPLC----------VKKAIKSAFLKADYEFADDSSLDISSGTTALTA 189          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  384 SAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            ++ F P+  SGS +D GP+ SM+DE I +DDL+ + GS     +  AFY VFDGHGG +AA + K+N MKL  +D   P TS       A ++  H               S+  + GTTALTA
Sbjct:   64 NSTFQPVFRSGSWSDKGPKQSMEDEFICVDDLTEYIGS-----STGAFYGVFDGHGGVDAASFTKKNIMKLVMEDKHFP-TSTKKATRSAFVKTDH---------ALADASSLDRSSGTTALTA 172          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C27_ORYSJ (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 52/143 (36.36%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  330 FESVVSCSETVKSTVMET-SAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            FE    C  TV     +  S+ FVP+I SG  +DIG R  M+D H+ I DL+ +FG         +FY VFDGHGG +AA YV++N  ++  +DAD P   +        +  S  +           + ++SS  GTTALTA
Sbjct:   27 FEMEKVCENTVSLDFKQARSSSFVPVIRSGDWSDIGGRDYMEDAHVCISDLANNFGHNSVDDEIISFYGVFDGHGGKDAAHYVRDNLPRVIVEDADFPLELE------KVVRRSFVQTDSQFAERCSHQNALSS--GTTALTA 161          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 3
Query:  246 KNKNSSPPSTPRFHELRVSDSVSSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMP 620
            K+K+ SP   P     RV ++                T        S  FVP I SG  +DIG R  M+D H+ I DL+ +FG         +FY VFDGHGG +AA +V++N  ++  +DAD P
Sbjct:   26 KSKSKSPDELPSPRMERVCENT---------------TAADFKQNKSGNFVPNIRSGDWSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAISFYGVFDGHGGKDAAHFVRDNLPRIIVEDADFP 135          
BLAST of DR405268 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  369 TVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTA 755
            T+ +  + FVP   SG+ +DIG R SM+D ++ +D+    FG L     PSAFY VFDGHGG  AA +   +  +   +D + P  S+IN V    L ++  +           + S++S  GTTAL A
Sbjct:   76 TIEKNKSEFVPATRSGAWSDIGSRSSMEDAYLCVDNFMDSFGLLNSEAGPSAFYGVFDGHGGKHAAEFACHHIPRYIVEDQEFP--SEINKV----LSSAFLQTDTAFLEACSLDGSLAS--GTTALAA 196          
The following BLAST results are available for this feature:
BLAST of DR405268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
P2C13_ARATH1.204e-3748.40Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]
P2C49_ARATH5.056e-3642.72Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
P2C43_ARATH1.377e-3348.91Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]
P2C47_ORYSJ2.198e-3153.72Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C02_ORYSJ3.510e-2946.81Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C27_ARATH4.025e-1732.89Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C47_ARATH7.105e-1439.52Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
P2C27_ORYSJ9.279e-1436.36Probable protein phosphatase 2C 27 OS=Oryza sativa... [more]
P2C54_ORYSJ6.650e-1235.20Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C22_ARATH1.481e-1135.66Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405268 ID=DR405268; Name=DR405268; organism=Citrus sinensis; type=EST; length=757bp
GGGGAGGTTACGCAACTAAAGTAGCTTTACAAATTCGTTCGTTCGTTCAT
TCATNNNACTGTTTTCCAATCTTCTTCTTCACAAATTTTCACTGGTTAAT
CTGAAAATACGACGTAGTTTTGGATATGATTGTGGGTCAAAAAATGGTGG
CGGAAACAGAGATAATTTGCAAAGCTACTGCTGTTTTAGACTTAGGTTTG
CAGTTCAATGTGAAAGATCAAAACTTGCAGATCGATGTTAATCTCAAGAA
CAAGAATAGTAGCCCTCCTTCAACTCCAAGATTCCATGAACTTCGTGTTT
CTGACTCAGTTTCCTCTGAAATCTCCTGTTTTGAATCGGTGGTCAGTTGT
TCAGAGACCGTTAAAAGTACTGTTATGGAGACTTCGGCAGTGTTTGTCCC
AATCATTTGTTCTGGCAGCTGTGCTGACATTGGACCAAGGATCTCCATGG
ATGATGAGCACATTCGGATTGATGATCTATCTGCCCACTTTGGATCTCTC
TTTAAGTGTCCTACTCCAAGTGCTTTCTATGCAGTGTTTGATGGTCATGG
TGGACCTGAGGCAGCTGTTTATGTCAAGGAGAATGCTATGAAATTATTTT
TTAAGGATGCTGATATGCCCCAAACATCTGATATCAATGATGTCTTCTTA
GCAGAGTTGGAGAATTCTCATAAGAAAGCATTTTTACTGGCAGACCTTGC
CTTGGCTGATGAACGCAGTGTTAGTAGTACGTGTGGAACAACTGCTCTGA
CTGCCTT
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