DR405266

Overview
NameDR405266
Unique NameDR405266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405266_ssr13 microsatellite DR405266_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:117..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.348e-22
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            M DTCGNCDCAD++QCVKKGSSY AD I+T+ S ++  VVMD  AAE +G C+CGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  100 TCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            TCGNCDC D+SQCVKKG+SY  D ++T+ S+V  V+V   +AAE +G C+CG  CAC +C CG
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCG 64          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTC 285
            M D CGNCDCAD SQCVKKG+S   D ++TD S++  VV M V AAE+ G C+CG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.556e-15
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTC 285
            M   C NCDC+D SQC KKG S+    ++T+   + TV+ MD  AAE  GNC+CGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            M   C NCDCAD +QCVKKG+SY    ++T+   + TV V D  AAE +G C+CG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            M D CGNCDCAD+SQCVKKG+SY    ++ + S        +V A E  G C+CG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            M D CGNCDCAD+SQCVKKG+SY    ++ + S        +V A E  G C+CG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            M D CGNCDCAD+SQCVKKG+SY    +  + S     +  +V   E +G C+C   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR405266 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFIKTDLSFVSTVVVMDVQAAETEGNCQCGPTCACVNCTCG 288
            M D CG+CDCAD+SQCVKKG+SY    +  + S     +  +V   E +G C+C   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR405266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.348e-2266.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC5.862e-1857.14Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.227e-1761.54Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.556e-1552.31Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO6.066e-1553.03Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.305e-1448.48Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.305e-1448.48Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.652e-1245.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI6.277e-1243.94Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O20 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405266 ID=DR405266; Name=DR405266; organism=Citrus sinensis; type=EST; length=447bp
GGGGATCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTC
TATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGCCGGACA
CCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGA
AGCAGCTATGCTGCTGACTTCATCAAGACTGACTTGAGCTTTGTCAGCAC
CGTTGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCCAGT
GCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTATTCACTAATAA
GCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTG
TGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCT
ACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCG
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