DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6928 contig Csv1_Contig6928:14..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.058e-52
Identity = 110/189 (58.20%), Postives = 136/189 (71.96%), Query Frame = 2
Query:  107 LFLFLILS-PAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDS-DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L LFL++S     +  NDGL+R+GL+K KLD  NRL  +  SK+ E ++   R+YN  G+LG+S DTDIVAL N++DAQY+GE++IGTP Q FTVIFDTGSSNLWV   +C FSV                 +NG SA+I+YGTGA+SGFFS DNVKVGDLVVK Q FIEAT+E S+TFL AKFDG+LG
Sbjct:   11 LCLFLLVSFNIVSSASNDGLLRVGLKKIKLDPENRLAARVESKDAEILKAAFRKYNPKGNLGESSDTDIVALKNYLDAQYYGEIAIGTPPQKFTVIFDTGSSNLWV-LCECLFSVACHFHARYKSSRSSSYKKNGTSASIRYGTGAVSGFFSYDNVKVGDLVVKEQVFIEATREPSLTFLVAKFDGLLG 198          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.868e-49
Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 2
Query:   74 MGTKFTA-IRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            MGT+  A + +A  L   L PA+ A   +GLVRI L+K+ +D+ +R+  + +S EE   R  +R  N  G  G  + DIVAL N+M+AQYFGE+ +GTP Q FTVIFDTGSSNLWVPSAKCYFS+                 +NG  AAIQYGTG+I+GFFS+D+V VGDLVVK+Q+FIEATKE  +TF+ AKFDGILG
Sbjct:    1 MGTRSVALVLLAAVLLQALLPASAA---EGLVRIALKKRPIDENSRVAAR-LSGEEGARRLGLRGANSLGG-GGGEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACFFHSRYKSGQSSTYQKNGKPAAIQYGTGSIAGFFSEDSVTVGDLVVKDQEFIEATKEPGLTFMVAKFDGILG 194          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.581e-48
Identity = 98/164 (59.76%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  176 LRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L+K+K++ +N   G+     +   R   R+Y + G+  DSD +++AL N+MDAQYFGE+ IGTP Q FTVIFDTGSSNLWVPS+KCYFSV                 +NG SAAIQYGTG+ISGFFSQD+VK+GDL+VK QDFIEATKE  ITFLAAKFDGILG
Sbjct:    1 LKKRKVNILNH-PGEHAGSNDANAR---RKYGVRGNFRDSDGELIALKNYMDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSVACLFHSKYRSTDSTTYKKNGKSAAIQYGTGSISGFFSQDSVKLGDLLVKEQDFIEATKEPGITFLAAKFDGILG 160          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.283e-47
Identity = 101/201 (50.25%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   74 MGTKFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRT---PVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            MGT+  A+ +   + L+ +    A   +GLVRI L+K+ +D+ +R+       EE+ + +   P+R         + + DIVAL N+M+AQYFGE+ +GTP Q FTVIFDTGSSNLWVPSAKCYFS+                 +NG  AAIQYGTG+I+G+FS+D+V VGDLVVK+Q+FIEATKE  ITFL AKFDGILG
Sbjct:    1 MGTRGLALALLAAVLLLQTVLPAASEAEGLVRIALKKRPIDRNSRVATGLSGGEEQPLLSGANPLR--------SEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILG 193          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.531e-40
Identity = 83/172 (48.26%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  152 NDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +DG +R+ L KK+LD+ +    +   +    ++T           G SD+D V L ++++ QY+G + +G+P Q FTVIFDTGSSNLWVPSAKCYFS+                  +G +  I YG+GAISGFFS+DNV VGDLVVKNQ FIEAT+E S+TF+  KFDGILG
Sbjct:   26 SDGFLRVNLNKKRLDKEDLTAAKLAQQGNRLLKT-----------GSSDSDPVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILG 186          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.216e-32
Identity = 80/187 (42.78%), Postives = 109/187 (58.29%), Query Frame = 2
Query:  113 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVR-RYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            + L+   +A AL ND LVRI L  KK   I R +  +  + EE +      +YNL     ++ T    L N++DAQY+GE+ +GTP Q FTV+FDTGSSNLWVPS  C    +                 +NG + AIQYG+G++SG+ SQD   +GDL + +Q F EA K+  + F+AAKFDGILG
Sbjct:    3 MLLLCVFSALALTNDALVRIPL--KKFRSIRRQLTDSGKRAEELLADHHSLKYNLSFPASNAPTP-ETLKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILG 186          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 79/187 (42.25%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  110 FLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFS-VXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            FL+L L  A FA  +D +VRI L  KK   I R +  +    E+ +       +  G    +      L N+MDAQY+GE+ +GTP Q FTV+FDTGSSNLW+PS  C F+ +                 +NG   AIQYG+G++SG+ SQD+  +GD+VV+ Q F EA K+  + F+AAKFDGILG
Sbjct:    3 FLYLFLF-AVFAWTSDAIVRIPL--KKFRSIRRTLSDSGLNVEQLLAGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILG 186          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 66/119 (55.46%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C+   +                  NG   AI YGTG++SGF SQD V +G+L +KNQ F EA K+  ITF+AAKFDGILG
Sbjct:   70 LKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKSSTYVENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGILG 188          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 74/180 (41.11%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  152 NDGLVRIGLRKKKLDQINRLVGQTV-SKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKV------GDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +  L+RI LRK     I R + +   S E+  ++ P+ +Y++  S    +     L N++DAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +                 +NG S  I YG+G++SG+ SQD V V      G + V+ Q F EATK+  + F+AAKFDGILG
Sbjct:   18 SSALIRIPLRK--FTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPRTKEPVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILG 195          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.159e-29
Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  308 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            V ++NF++AQYF E+SIGTP QTF V+ DTGSSNLWVP   C  S+                 RNG S AI+YG+G++ GF SQDNV++GD+ +KNQ F EAT E  + F   +FDGILG
Sbjct:   77 VLIDNFLNAQYFSEISIGTPPQTFKVVLDTGSSNLWVPGKDCS-SIACFLHSTYDSSASSTFTRNGTSFAIRYGSGSLEGFVSQDNVQIGDMKIKNQLFAEATSEPGLAFAFGRFDGILG 195          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ASPR_CUCPE1.058e-5258.20Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ1.868e-4954.27Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA1.581e-4859.76Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR_HORVU2.283e-4750.25Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPRX_ORYSJ3.531e-4048.26Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_CHIHA1.216e-3242.78Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_CLUHA2.075e-3242.25Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHICK8.717e-3155.46Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_RAT2.804e-2941.11Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CARP_NANOT8.159e-2951.67Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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