EY728836

Overview
NameEY728836
Unique NameEY728836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728836_ssr88 microsatellite EY728836_ssr88:88..99. BLAST: Citrus ESTs to SwissProt
Csv1_Contig12220 contig Csv1_Contig12220:32..376. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY728836 vs. ExPASy Swiss-Prot
Match: XYLF_ECOLI (D-xylose-binding periplasmic protein OS=Escherichia coli (strain K12) GN=xylF PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = -2 
Query:   17 LKTVLITSVLALLSNSVMADAAHPKIGFSIDDLRLERWARDRDYFTAAAEQLGAKVYVQSADANEQRQISQIE 235
            +K +L+T   +LL  +V A A   KIG +IDDLRLERW +DRD F   AE LGAKV+VQSA+ NE+ Q+SQIE
Sbjct:    3 IKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIE 75
[Close]
BLAST of EY728836 vs. ExPASy Swiss-Prot
Match: XYLF_HAEIN (D-xylose-binding periplasmic protein OS=Haemophilus influenzae GN=xylF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = -2 
Query:   17 LKTVLITSVLALLSNSVMADAAHPKIGFSIDDLRLERWARDRDYFTAAAEQLGAKVYVQSADANEQRQISQIE 235
            +K+ L+T V AL   S  A +   KIG SIDDLRLERW +DRD F   AE +GAKV+VQSA+ ++  QISQIE
Sbjct:    3 IKSALLTLVGALTVFSSSAHSKDLKIGLSIDDLRLERWQKDRDIFVNKAESMGAKVFVQSANGDDSAQISQIE 75
The following BLAST results are available for this feature:
BLAST of EY728836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XYLF_ECOLI1.540e-1657.53D-xylose-binding periplasmic protein OS=Escherichi... [more]
XYLF_HAEIN3.211e-1456.16D-xylose-binding periplasmic protein OS=Haemophilu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728836 ID=EY728836; Name=EY728836; organism=Citrus sinensis; type=EST; length=344bp
CCCCGGGAGATCAGGTTTCAATCTGCGAGATCTGCCGCTGTTCGTTGGCG
TCCGCCGATTGCACATAGACCTTGGCGCCCAGTTGCTCGGCGGCGGCGGT
GAAGTAATCACGGTCGCGGGCCCAGCGCTCAAGGCGCAGGTCGTCGATGG
AAAAGCCGATTTTCGGATGGGCCGCGTCGGCCATGACCGAGTTGGAAAGC
AGTGCCAGAACGCTGGTGATCAAGACGGTTTTCAGGTGTTTCATGATGGT
GAGTCCCTTTTATTGTTGTTTAGACGCACTTCTGGACCTGGAGCGTAGCG
GTCATGGGTAGATAAAGCGATTCACCACGCCTTCGAGCATCTCC
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