DR404641

Overview
NameDR404641
Unique NameDR404641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR404641_ssr107 microsatellite DR404641_ssr107:107..127. BLAST: Citrus ESTs to Prunus persica proteins V1
DR404641_ssr415 microsatellite DR404641_ssr415:415..426. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11919 contig Csv1_Contig11919:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.134e-72
Identity = 148/214 (69.16%), Postives = 158/214 (73.83%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXX--ISSLRRSPLEDHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGE--AAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            MESRVLSRA        ++ L R PL    N S  S+K  G+V +GGN++WGRQLRP L        A L       LRP  ATA     G+DSAGE   APV FF RYPAL TGFFFF WYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPID  LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT+KALEPF
Sbjct:    1 MESRVLSRATTLSSLPTLNKLHRLPLA---NASLPSVKSFGSVSDGGNLVWGRQLRPELCSPVLKKGASL-------LRPCPATAG----GNDSAGEEKVAPVGFFSRYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPF 200          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.826e-69
Identity = 138/212 (65.09%), Postives = 152/212 (71.70%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            MESRVLS        I  L R               P      GGN++WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV FF +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS IHL VGVVYCL  WAVGLPKRAP+DS LLKLLIPVA CHALGHVTSNVSFAAVAVSFTHTIK+LEPF
Sbjct:    1 MESRVLSSGATTISGIPRLTRPAGRTTTTTVVAVASPAKLNTNGGNLVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCTATAS------DSAGDAAPVGFFAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSAIHLAVGVVYCLGGWAVGLPKRAPMDSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPF 206          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.313e-69
Identity = 141/216 (65.28%), Postives = 160/216 (74.07%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFIS------LKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            MESRVL RA      +  LRR     ++  S  S       KPIG++GEGGN+I GRQLRP LLL+S          K+EIL+P+ A +   AEG DSAGE   V F  +YP LVTG    MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW+VGLPKRAP++S +LK+LIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEPF
Sbjct:    1 MESRVLLRATETVTGVPQLRRPIRAINRQFSTASSSFTAFAKPIGSIGEGGNLISGRQLRPLLLLDS-------LPEKREILKPVRAAS---AEGGDSAGETK-VGFLGKYPWLVTGILLLMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPF 205          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.546e-68
Identity = 137/212 (64.62%), Postives = 153/212 (72.17%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            MESRVLS        +  L + P       +     P      GGNV+WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV F  +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW VGLPKRAP+DS +LKLLIPV  CHALGHVTSNVSFAAVAVSFTHTIKALEPF
Sbjct:    1 MESRVLSSGATAISGVPRLTK-PAGRITTTTVAVAFPARLNATGGNVVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCSATAS------DSAGDAAPVGFLAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLGSWTVGLPKRAPVDSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPF 205          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.498e-66
Identity = 133/212 (62.74%), Postives = 150/212 (70.75%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFIS--LKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            MESRVLSR           R  P  +  +  F +    P+G V +GG++ WGRQLRP LLLE      G    ++E       TA  P   +  +   A   F ++YPALVTG FFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW+VGLPKRAP+DSKLLKLLIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEPF
Sbjct:    1 MESRVLSRTTAIAALPKLFR--PSREAASFGFATGVKTPVGLVKDGGSLTWGRQLRPVLLLEP--VQTGPVCSRRE------KTAVQPCRAASGSSGEAKTGFLEKYPALVTGSFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPF 202          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.564e-65
Identity = 127/178 (71.35%), Postives = 143/178 (80.34%), Query Frame = 1
Query:  178 ISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            ++ KP+G +  G N+IWGRQLRPA+LLE+S         K+E ++P  A ASS A  SDS+G+A  V FF++   L TGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPIDS  LKLL PVA CHALGHVTSNVSFAAV VSFTHT+KALEPF
Sbjct:   45 VTAKPVGPLIAGPNLIWGRQLRPAILLETSP--------KRESIKPCSAAASSSAGSSDSSGDAK-VGFFNK-ATLTTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAPIDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPF 212          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.017e-64
Identity = 119/177 (67.23%), Postives = 143/177 (80.79%), Query Frame = 1
Query:  181 SLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            ++K   AV +   ++WGRQLRPALLL ++  P+ L   ++  L+P       PA  ++SAGEA  V F ++YPALVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS+IHL+VGVVYCL+SW+VGLPKRAPI+  LLKLL PVA+CH +GH+TSNVSFAAVAVSF HTIKALEPF
Sbjct:   40 TVKCAAAVPDAAPIVWGRQLRPALLLPAALLPS-LQPARRHTLQP-------PAAAAESAGEAKSVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLPKRAPINGTLLKLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPF 208          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  403 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEP 708
            L  G +F  W+ LNV+FNI NK++ N +PYP+  S + L  G +  L+SWAVG+ +    D    K L PVAV H +GHV + VS + VAVSFTH IK+ EP
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISWAVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEP 196          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  403 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEP 708
            L  G +F  W+ LNV+FNI NK++ N FPYP+  S + L  G +  LVSWA  +      D +  K L PVAV H +GHV + VS + VAVSFTH IK+ EP
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEP 196          
BLAST of DR404641 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  256 LESSNAPAGLFAGKKEILRPILAT------ASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPF 711
            L SS++P   ++G   +  P L T      A++  E  + +G+   V        L  G  F MWY  N+ FNI NK++      P  V+++   VG V     WA+ L KR  I +  L  ++P+AV H LG++ +N+S   V+VSFTHTIKA+EPF
Sbjct:   53 LASSDSPLRAWSGLPSVSSPSLDTNRFKTAATAVPEEGEGSGKMTKV--------LELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPF 202          
The following BLAST results are available for this feature:
BLAST of DR404641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TPT_PEA5.134e-7269.16Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR1.826e-6965.09Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB5.313e-6965.28Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR1.546e-6864.62Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL5.498e-6662.74Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU3.564e-6571.35Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE3.017e-6467.23Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH2.857e-2248.04Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH2.418e-2148.04Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT2_BRAOB2.047e-2036.08Triose phosphate/phosphate translocator, non-green... [more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P16 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404641 ID=DR404641; Name=DR404641; organism=Citrus sinensis; type=EST; length=713bp
GGGGCTCTCTCGTTAAGAGCTCACACAGGCTACGAAAACCACATTTGTTT
CTCTCTCAAAAGTAGCCACAGCGGTGACACGATGGAGTCGCGAGTGCTGT
CACGCGCCACCACCACCACCACCACCATTTCAAGCCTCCGAAGATCGCCG
CTTGAGGACCACCAAAACGTCAGCTTCATCTCGTTGAAGCCGATTGGAGC
CGTTGGTGAAGGCGGGAATGTCATTTGGGGAAGACAGCTACGTCCTGCTC
TGCTCCTCGAGAGCTCCAATGCTCCGGCTGGTCTTTTCGCCGGAAAGAAG
GAGATTCTCCGTCCAATCCTCGCCACCGCTTCTTCTCCTGCCGAAGGAAG
CGATTCCGCCGGAGAAGCTGCTCCGGTCAGATTCTTTGACAGGTATCCGG
CCCTCGTGACCGGGTTCTTCTTCTTCATGTGGTACTTCCTGAACGTGATA
TTCAACATTCTTAACAAGAGGATTTACAATTACTTCCCATATCCTTATTT
TGTGTCCGTTATTCATTTGTTGGTTGGGGTGGTTTACTGTTTGGTGAGCT
GGGCTGTGGGCCTTCCCAAGCGAGCTCCTATTGATTCAAAACTCCTGAAG
CTCTTAATCCCTGTTGCTGTGTGTCATGCATTGGGCCATGTTACCAGCAA
CGTGTCTTTTGCAGCAGTTGCTGTCTCCTTTACCCATACCATCAAAGCTC
TTGAGCCCTTCTT
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