DR404640

Overview
NameDR404640
Unique NameDR404640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR404640_ssr107 microsatellite DR404640_ssr107:107..127. BLAST: Citrus ESTs to Prunus persica proteins V1
DR404640_ssr415 microsatellite DR404640_ssr415:415..426. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11919 contig Csv1_Contig11919:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.643e-76
Identity = 156/222 (70.27%), Postives = 166/222 (74.77%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXX--ISSLRRSPLEDHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGE--AAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            MESRVLSRA        ++ L R PL    N S  S+K  G+V +GGN++WGRQLRP L        A L       LRP  ATA     G+DSAGE   APV FF RYPAL TGFFFF WYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPID  LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT+KALEPFFNAAASQF
Sbjct:    1 MESRVLSRATTLSSLPTLNKLHRLPLA---NASLPSVKSFGSVSDGGNLVWGRQLRPELCSPVLKKGASL-------LRPCPATAG----GNDSAGEEKVAPVGFFSRYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQF 208          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.842e-74
Identity = 146/220 (66.36%), Postives = 160/220 (72.73%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            MESRVLS        I  L R               P      GGN++WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV FF +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS IHL VGVVYCL  WAVGLPKRAP+DS LLKLLIPVA CHALGHVTSNVSFAAVAVSFTHTIK+LEPFFNAAASQF
Sbjct:    1 MESRVLSSGATTISGIPRLTRPAGRTTTTTVVAVASPAKLNTNGGNLVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCTATAS------DSAGDAAPVGFFAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSAIHLAVGVVYCLGGWAVGLPKRAPMDSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQF 214          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.787e-73
Identity = 148/224 (66.07%), Postives = 168/224 (75.00%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFIS------LKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            MESRVL RA      +  LRR     ++  S  S       KPIG++GEGGN+I GRQLRP LLL+S          K+EIL+P+ A +   AEG DSAGE   V F  +YP LVTG    MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW+VGLPKRAP++S +LK+LIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEPFFNA+ASQF
Sbjct:    1 MESRVLLRATETVTGVPQLRRPIRAINRQFSTASSSFTAFAKPIGSIGEGGNLISGRQLRPLLLLDS-------LPEKREILKPVRAAS---AEGGDSAGETK-VGFLGKYPWLVTGILLLMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASASQF 213          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.946e-73
Identity = 145/220 (65.91%), Postives = 161/220 (73.18%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            MESRVLS        +  L + P       +     P      GGNV+WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV F  +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW VGLPKRAP+DS +LKLLIPV  CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF
Sbjct:    1 MESRVLSSGATAISGVPRLTK-PAGRITTTTVAVAFPARLNATGGNVVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCSATAS------DSAGDAAPVGFLAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLGSWTVGLPKRAPVDSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 213          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.759e-70
Identity = 141/220 (64.09%), Postives = 158/220 (71.82%), Query Frame = 1
Query:   82 MESRVLSRAXXXXXXISSLRRSPLEDHQNVSFIS--LKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            MESRVLSR           R  P  +  +  F +    P+G V +GG++ WGRQLRP LLLE      G    ++E       TA  P   +  +   A   F ++YPALVTG FFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW+VGLPKRAP+DSKLLKLLIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF
Sbjct:    1 MESRVLSRTTAIAALPKLFR--PSREAASFGFATGVKTPVGLVKDGGSLTWGRQLRPVLLLEP--VQTGPVCSRRE------KTAVQPCRAASGSSGEAKTGFLEKYPALVTGSFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 210          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.140e-69
Identity = 135/186 (72.58%), Postives = 151/186 (81.18%), Query Frame = 1
Query:  178 ISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            ++ KP+G +  G N+IWGRQLRPA+LLE+S         K+E ++P  A ASS A  SDS+G+A  V FF++   L TGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPIDS  LKLL PVA CHALGHVTSNVSFAAV VSFTHT+KALEPFFNAAASQF
Sbjct:   45 VTAKPVGPLIAGPNLIWGRQLRPAILLETSP--------KRESIKPCSAAASSSAGSSDSSGDAK-VGFFNK-ATLTTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAPIDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQF 220          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.171e-68
Identity = 125/185 (67.57%), Postives = 151/185 (81.62%), Query Frame = 1
Query:  181 SLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            ++K   AV +   ++WGRQLRPALLL ++  P+ L   ++  L+P       PA  ++SAGEA  V F ++YPALVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS+IHL+VGVVYCL+SW+VGLPKRAPI+  LLKLL PVA+CH +GH+TSNVSFAAVAVSF HTIKALEPFF+AAA+QF
Sbjct:   40 TVKCAAAVPDAAPIVWGRQLRPALLLPAALLPS-LQPARRHTLQP-------PAAAAESAGEAKSVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLPKRAPINGTLLKLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQF 216          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  403 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            L  G +F  W+ LNV+FNI NK++ N +PYP+  S + L  G +  L+SWAVG+ +    D    K L PVAV H +GHV + VS + VAVSFTH IK+ EP F+   S+F
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISWAVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF 205          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  403 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 735
            L  G +F  W+ LNV+FNI NK++ N FPYP+  S + L  G +  LVSWA  +      D +  K L PVAV H +GHV + VS + VAVSFTH IK+ EP F+   S+F
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF 205          
BLAST of DR404640 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  256 LESSNAPAGLFAGKKEILRPILAT------ASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAAS 729
            L SS++P   ++G   +  P L T      A++  E  + +G+   V        L  G  F MWY  N+ FNI NK++      P  V+++   VG V     WA+ L KR  I +  L  ++P+AV H LG++ +N+S   V+VSFTHTIKA+EPFF+   S
Sbjct:   53 LASSDSPLRAWSGLPSVSSPSLDTNRFKTAATAVPEEGEGSGKMTKV--------LELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLS 208          
The following BLAST results are available for this feature:
BLAST of DR404640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TPT_PEA1.643e-7670.27Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR5.842e-7466.36Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB3.787e-7366.07Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR4.946e-7365.91Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL1.759e-7064.09Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU1.140e-6972.58Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE8.171e-6867.57Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH5.545e-2446.85Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH4.694e-2346.85Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT2_BRAOB1.510e-2135.98Triose phosphate/phosphate translocator, non-green... [more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P15 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404640 ID=DR404640; Name=DR404640; organism=Citrus sinensis; type=EST; length=737bp
GGGGCTCTCTCGTTAAGAGCTCACACAGGCTACGAAAACCACATTTGTTT
CTCTCTCAAAAGTAGCCACAGCGGTGACACGATGGAGTCGCGAGTGCTGT
CACGCGCCACCACCACCACCACCACCATTTCAAGCCTCCGAAGATCGCCG
CTTGAGGACCACCAAAACGTCAGCTTCATCTCGTTGAAGCCGATTGGAGC
CGTTGGTGAAGGCGGGAATGTCATTTGGGGAAGACAGCTACGTCCTGCTC
TGCTCCTCGAGAGCTCCAATGCTCCGGCTGGTCTTTTCGCCGGAAAGAAG
GAGATTCTCCGTCCAATCCTCGCCACCGCTTCTTCTCCTGCCGAAGGAAG
CGATTCCGCCGGAGAAGCTGCTCCGGTCAGATTCTTTGACAGGTATCCGG
CCCTCGTGACCGGGTTCTTCTTCTTCATGTGGTACTTCCTGAACGTGATA
TTCAACATTCTTAACAAGAGGATTTACAATTACTTCCCATATCCTTATTT
TGTGTCCGTTATTCATTTGTTGGTTGGGGTGGTTTACTGTTTGGTGAGCT
GGGCTGTGGGCCTTCCCAAGCGAGCTCCTATTGATTCAAAACTCCTGAAG
CTCTTAATCCCTGTTGCTGTGTGTCATGCATTGGGCCATGTTACCAGCAA
CGTGTCTTTTGCAGCAGTTGCTGTCTCCTTTACCCATACCATCAAAGCTC
TTGAGCCCTTCTTCAACGCTGCTGCTTCACAATTCAT
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