DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_FRASC (UDP-N-acetylmuramate--L-alanine ligase OS=Frankia sp. (strain CcI3) GN=murC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            KSTT++ML  VL+A G D TA++GA V Q   G+   G G  FVLE+DEY G F GL PS+AV+TN++WEH D+F DE +V++ F  F +++R GG LV+CGD     ++L ++
Sbjct:  123 KSTTSAMLTLVLRAAGLDPTAVIGAEVSQL-GGNALAGSGDVFVLESDEYGGAFAGLDPSIAVITNVEWEHPDVFPDEASVRTAFAAFARRVRPGGRLVVCGDHPGVVAVLTEL 235          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_FRAAA (UDP-N-acetylmuramate--L-alanine ligase OS=Frankia alni (strain ACN14a) GN=murC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            KSTT++ML  VL+A G D TA++GA V Q   G+   G G  FVLE+DEY G F GL P++AV+TN++WEH DIF DE +V++ F  F +++R GG LV+CGD     ++L ++
Sbjct:  123 KSTTSAMLTLVLRAAGLDPTAVIGAEVSQL-GGNALAGSGDLFVLESDEYGGAFAGLEPTIAVITNVEWEHPDIFPDEASVRTAFTAFARRVRPGGRLVVCGDDPGVAAVLAEL 235          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESDG (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio desulfuricans (strain G20) GN=murC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL LSP V VVTN+D +HVD + D+ A+ + F  F+ ++   G  V+CGD    R LL QIK+
Sbjct:  116 KTTTTSLTAAIFDEAGTDPTVIIGGRLNAYGSNARL-GEGEFLLAEADESDGSFLCLSPVVNVVTNVDLDHVDFYHDQQAIDTAFINFMNKVPFYGMNVVCGDDAGVRRLLPQIKR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_SOLUE (UDP-N-acetylmuramate--L-alanine ligase OS=Solibacter usitatus (strain Ellin6076) GN=murC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT SM A +L   G D T +VG  V      +   G     V+E+DE DG FL L+P +AVVTN+D EH+D + D DA+++ F  F+ ++   G +++C D    + LL +I++ T
Sbjct:  127 KTTTTSMAATILNYAGLDPTVVVGGRVGTMGGSNARVGHSDFLVVESDESDGSFLKLAPIIAVVTNVDREHLDHYPDLDAIRAAFLEFVNKVPFYGAVIVCLDDANVQGLLPEIRRRT 244          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYXXD (UDP-N-acetylmuramate--L-alanine ligase OS=Myxococcus xanthus (strain DK 1622) GN=murC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 50/116 (43.10%), Postives = 72/116 (62.07%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM+A VL A G D TA+VG  V    D +   G  +  V+EADE DG FL L PS+A+VTN+D EH+D + D D ++S F  F  ++   G  V+C D+   ++LL +I++
Sbjct:  126 KTTTTSMVATVLSAAGLDPTAVVGGKVNVL-DSNAKLGKSELMVVEADESDGSFLHLHPSIAIVTNIDPEHMDHYGDLDTLQSAFVEFCNRVPFYGLNVLCLDNPNVQALLPRIEK 240          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ROSCS (UDP-N-acetylmuramate--L-alanine ligase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=murC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT +++A +L   G     ++G   P     + +       V+EADEYD  FL L+P +A++TN++WEHVDI+   D  ++ FR F +Q+     L++CGD+  AR ++
Sbjct:  111 KTTTTALIALMLTRAGIAPGFLIGGETPDLGVNARWGNPAAPLVVEADEYDRTFLALTPDIAIITNVEWEHVDIYPSPDEYEAAFRTFARQVAHPQRLIVCGDNAGARRVV 221          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESAA (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S++A VL A G D T ++G  +      +   G G+  V EADE DG FL +SPS+AVVTN+D EH+D ++D D +K  F +F+ +I   G  V+C DS+  + L+  I +
Sbjct:  116 KTTTTSIVADVLAAGGLDPTVVIGGKLLSIGSNAKL-GHGEFIVAEADESDGSFLKMSPSIAVVTNIDREHMDHYKDMDEIKDAFAQFVDKIPFYGLSVLCLDSEPVQDLIPFINK 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCS2 (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium smegmatis GN=murC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P+VAVVTN++ +H+D F  E A  ++F  F+++I  GG LV+C D   A +L D+
Sbjct:  126 KTTTTSMLIVALQHSGFDPSFAVGGELGEAGTNA-HHGSGTTFVAEADESDGSLLEYTPNVAVVTNIEADHLDFFGSEQAYTAVFDSFVERIAPGGALVVCTDDPGAAALADR 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PELCD (UDP-N-acetylmuramate--L-alanine ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=murC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SM++ VL   G D T ++G  +      +   G GK  V EADE DG FL LSP +AVVTN+D +H+D + D D +K  F  F+ +I   G  ++C D    ++L+ Q+
Sbjct:  116 KTTTTSMVSTVLSKSGIDPTVVIGGRLDSIGSNAKL-GQGKFLVAEADESDGSFLKLSPIIAVVTNVDADHLDYYSDLDEIKRTFVDFINKIPFYGVAILCLDDPNVQALIPQV 228          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESOH (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K++T SM+A VL   G D T ++G  +      ++  G G   V EADE DG FL  SPS+AVVTN+D EH+D + D  A+   F  FL +I   G  V+C D++  ++L+  IK+
Sbjct:  116 KTSTTSMVASVLGQGGMDPTVVIGGKLKSIGTNAVL-GHGDYIVAEADESDGSFLKFSPSIAVVTNIDREHLDFYPDLAAISKSFLEFLDRIPFYGVAVVCLDNEPLQALVPLIKK 230          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_FRASC1.290e-2549.12UDP-N-acetylmuramate--L-alanine ligase OS=Frankia ... [more]
MURC_FRAAA1.290e-2549.12UDP-N-acetylmuramate--L-alanine ligase OS=Frankia ... [more]
MURC_DESDG1.094e-1640.52UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_SOLUE3.184e-1638.14UDP-N-acetylmuramate--L-alanine ligase OS=Solibact... [more]
MURC_MYXXD3.184e-1643.10UDP-N-acetylmuramate--L-alanine ligase OS=Myxococc... [more]
MURC_ROSCS7.092e-1635.14UDP-N-acetylmuramate--L-alanine ligase OS=Roseifle... [more]
MURC_DESAA7.092e-1641.38UDP-N-acetylmuramate--L-alanine ligase OS=Desulfat... [more]
MURC_MYCS21.210e-1540.71UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_PELCD2.064e-1539.47UDP-N-acetylmuramate--L-alanine ligase OS=Pelobact... [more]
MURC_DESOH2.064e-1540.52UDP-N-acetylmuramate--L-alanine ligase OS=Desulfoc... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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