DR404324

Overview
NameDR404324
Unique NameDR404324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR404324_ssr479 microsatellite DR404324_ssr479:479..493. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3736 contig Csv1_Contig3736:232..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404324 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 49/95 (51.58%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   76 KMEASHVAAICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 360
            KM+ S V A+  +V L L     V+ AVTC+PT+LSSCV AIT  + PS  CCSK+K Q+PCLC Y++NPSL++++N+P A++V S CG  +P C
Sbjct:    6 KMKMSVVCAV-VVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of DR404324 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  157 VTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 360
            VTCSP QLS C+  I S  P    CC K++EQ+PCLC YL+NPSLR+++N+PNAR++AS CG P P+C
Sbjct:    1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of DR404324 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   79 MEASHVAAICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 360
            M      A+  ++V+ LAA         C P QL+ C SAI   T PS  CC  ++ Q+ CLCQY+++P+   ++++P+AR   + CG P P C
Sbjct:    9 MRKEAAVAVMMVMVVTLAAGADAGAGAACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of DR404324 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  100 AICTLVVLLLAAETQVSVAV---TCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 360
            A+  L V ++AA     V V   +C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of DR404324 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  100 AICTLVVLLLAAETQVSVAVT---CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 360
            A+  L V ++AA     V V    C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of DR404324 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  163 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 360
            C  +QL+ C SAI S   PS  CC  ++ Q+PC CQY ++P+  ++I +P+AR    +CG   P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of DR404324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NLTP_VIGUN2.257e-2351.58Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR4.706e-2158.82Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_HORVU2.955e-1536.17Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTPX_ORYSI3.993e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ5.216e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2P_WHEAT1.982e-1140.91Non-specific lipid-transfer protein 2P OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P14 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404324 ID=DR404324; Name=DR404324; organism=Citrus sinensis; type=EST; length=661bp
GGGGGACAGCATCACCCATCTAACAAAGCACATTAGTCTCCAGCTTGTAA
GTCCATTTGATTCATACTACATCGAAAAATGGAGGCTTCGCATGTAGCAG
CCATTTGCACATTGGTGGTTCTTCTTCTGGCAGCTGAAACACAAGTCTCA
GTGGCAGTGACATGCAGCCCAACCCAACTGAGCTCTTGTGTTAGCGCCAT
CACATCTTCAACTCCACCATCAAGGCTCTGCTGCAGCAAGATCAAAGAAC
AGAAGCCTTGCCTTTGCCAGTACCTTCGAAACCCGAGCCTCAGGAAGTTT
ATCAACACCCCAAATGCCAGGAGAGTTGCTAGCACTTGTGGCACTCCCTT
CCCAAAATGCTAAATGTCTCTTCTCTCCCATTTCTCTTTGCTGCATTACT
CTCGTTTAATGCATAGTCTAATATCGAGTGGTGATTGAAGAGAATTATGA
GTTAGTAGTTTAATTGTGCTGTGTTTTATGTTGTTGTTGTTGTGATACTT
GTGGAAACAATGTTGGGGGTCATGGGTTACATCACATGGCACCAACATCT
GTCTTAGCTAGTGTGTTCTGTTTGTTCCGAAGGCACTACTTATTATTTAT
AAGGGAAATCACTGTTGTATCGTCTTCCTTTCTAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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