DR404323

Overview
NameDR404323
Unique NameDR404323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6199 contig Csv1_Contig6199:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.224e-81
Identity = 156/202 (77.23%), Postives = 163/202 (80.69%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR            EG+E +A A EE KKS+HV RKLEKR++ RTLDPHIEE FGSGRLLACI+SRPGQCGRADGYI  G
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEA-AAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEG 201          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.036e-80
Identity = 156/202 (77.23%), Postives = 164/202 (81.19%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR            EG++ +A  TEEAKKS+HV+RKLEKRQ+ RTLD HIEE FGSGRLLACI+SRPGQCGRADGYI  G
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR-KKKAPAAKKDAEGQDAEA-TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEG 200          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.080e-77
Identity = 151/202 (74.75%), Postives = 160/202 (79.21%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR              EEG+A  TEEAKKS+HV  KLEKRQ+ RTLD HIEE FG G+LLACI+SRPGQCG+ADG I  G
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTP--EEGEA-TTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEG 199          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.506e-76
Identity = 149/202 (73.76%), Postives = 157/202 (77.72%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR              ++G+A  TEE KKS+HV RKLE RQ+ R LD H+EE F SGRLLACIASRPGQCGRADGYI  G
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRK-------------KKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEG 189          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.004e-75
Identity = 144/203 (70.94%), Postives = 157/203 (77.34%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR-XXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR             EGEE    A EE KKS+H+LRK+  RQ+ R+LD HIE+ F SGRLLACI+SRPGQCGRADGYI  G
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEG 203          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.320e-51
Identity = 106/202 (52.48%), Postives = 132/202 (65.35%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR              EE D       K+S  V +K +KR+K+  + P ++E F  G+LLACI+SRPGQCGRADGY+  G
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGRKKGAKLTP------EEED---ILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEG 192          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 102/205 (49.76%), Postives = 129/205 (62.93%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EE F  G+LLACIASRPGQCGRADGY+  G
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEG 192          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 102/205 (49.76%), Postives = 129/205 (62.93%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EE F  G+LLACIASRPGQCGRADGY+  G
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEG 192          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 102/205 (49.76%), Postives = 129/205 (62.93%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EE F  G+LLACIASRPGQCGRADGY+  G
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEG 192          
BLAST of DR404323 vs. ExPASy Swiss-Prot
Match: RS8_HUMAN (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 102/205 (49.76%), Postives = 129/205 (62.93%), Query Frame = 2
Query:   89 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIEE*FGSGRLLACIASRPGQCGRADGYIFGG 694
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EE F  G+LLACIASRPGQCGRADGY+  G
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEG 192          
The following BLAST results are available for this feature:
BLAST of DR404323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE1.224e-8177.2340S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ1.036e-8077.2340S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR9.080e-7774.7540S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH4.506e-7673.7640S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH1.004e-7570.9440S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU1.320e-5152.4840S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_RAT4.696e-4949.7640S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]
RS8_MOUSE4.696e-4949.7640S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA4.696e-4949.7640S ribosomal protein S8 OS=Macaca fascicularis GN... [more]
RS8_HUMAN4.696e-4949.7640S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P13 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404323 ID=DR404323; Name=DR404323; organism=Citrus sinensis; type=EST; length=709bp
GGGGACTTTCTTTTTCTCTGCCTCAAACGCTGAATCACCTATCAATCGCC
CACGGACAGAGAAACCCTAAGAATTTCTCTCTGCGAAAATGGGTATTTCC
CGTGATTCCATGCACAAGAGGCGTGCTACTGGGGGCAAGAAGAAGGCTTG
GAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTGCAAATACTAAGC
TATCAAGCAACAAGACAGTGAGGAGGATTAGGGTTCGTGGAGGTAATGTG
AAATGGCGTGCTTTGAGGCTTGACACAGGAAACTACTCCTGGGGAAGCGA
AGCAGTGACTCGTAAGACCAGAATTCTGGATGTGGTATACAATGCCTCCA
ATAATGAGCTGGTCCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAG
GTTGATGCAGCACCATTCAAGCAGTGGTATCTCCAGCATTATGGTGTTGA
CATTGGTCGCAAGAAGAAGGCTGCAGCTGCTGCCACAACCAAGAAAGAAG
GAGAGGAAGGAGACGCTCCTGCCACTGAGGAGGCAAAGAAGAGCAGCCAT
GTCTTGAGAAAGCTTGAGAAGCGTCAAAAAGATCGCACACTTGACCCACA
TATTGAGGAGTAGTTTGGTAGTGGTCGTTTGTTAGCTTGTATCGCATCAC
GGCCCGGCCAGTGTGGACGTGCTGATGGATACATCTTTGGAGGGTAAAGA
GCTGGAATT
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