DR404317

Overview
NameDR404317
Unique NameDR404317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2943 contig Csv1_Contig2943:112..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.169e-62
Identity = 112/132 (84.85%), Postives = 125/132 (94.70%), Query Frame = 1
Query:  142 GGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKS 537
            G +AK+FTL+EVS+HN   DCW++INGKVY+VTKFLEDHPGGD+VLLS+TGKDATDDFEDVGHS SAREMM+QYYVGEID +TIPKK +YTPPKQPHYNQDKTSEFII+LLQFLVPLAILGLAVGIRIYTKS
Sbjct:    2 GDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTKS 133          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.429e-60
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 1
Query:  142 GGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 540
            GG+ KVFTLAEVS HNN KDCWL+I+GKVYDVTKFL+DHPGGDEVLLSATGKDATDDFEDVGHS SAR M+D+YYVG+ID +TIP K +YTPP QPHYNQDKTSEF+++LLQFLVPL ILG+A GIR YTK S
Sbjct:    2 GGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQS 134          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.064e-59
Identity = 106/133 (79.70%), Postives = 120/133 (90.23%), Query Frame = 1
Query:  142 GGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 540
            GG +KVFTLAEVS+HNN KDCWLII+GKVY+VTKFLEDHPGG EVLLSATGKDATDDFED+GHS SAR M+D+YYVG+ID STIP K +YTPPKQPHYNQDKT+EFI++LLQFLVPL ILG+A G+  YTK S
Sbjct:    2 GGQSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQS 134          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.790e-56
Identity = 102/134 (76.12%), Postives = 117/134 (87.31%), Query Frame = 1
Query:  136 MGGGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKS 537
            M   + KV+TL EV+ HN+  DCWLII GKVY+V+KFLEDHPGGD+VLLS+TGKDATDDFEDVGHS +AR MMD+YYVG+ID STIP + +Y PPKQPHYNQDKT EFII++LQFLVPLAILGLAV IRIYTKS
Sbjct:    1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKS 134          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.759e-56
Identity = 101/129 (78.29%), Postives = 115/129 (89.15%), Query Frame = 1
Query:  154 KVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 540
            K+FTLAEV+ HNN KDCWLIINGKVYDVTKFLEDHPGGD+VLLSATGKDATDDFED+GHS SA+ M+D+YYVG+ID S+IP + +YTPPKQP YN DKT EF+I+LLQFLVPL IL  A+GIR YTKSS
Sbjct:    3 KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTKSS 131          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.213e-51
Identity = 96/132 (72.73%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  145 GDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 540
            G +KV++LAEVS+H+   DCWL+I GKVYDVTKFL+DHPGG +VLLS+T KDATDDFED+GHS SAR MMD+  VG+ID STIP K  YTPPKQP YNQDKT +FII+LLQFLVPL ILG+AVGIR Y K S
Sbjct:    2 GGSKVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQS 133          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.303e-49
Identity = 89/129 (68.99%), Postives = 109/129 (84.50%), Query Frame = 1
Query:  148 DAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTK 534
            D KV +  EVS HN  KDCWLII+GKVYDVT F++DHPGGDEVLLS+TGKDAT+DFEDVGHS +AR+MMD+Y++GEID S++P  + Y  P+QP YNQDKT EFII++LQFLVP+ ILGLA+ +R YTK
Sbjct:    4 DRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTK 132          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.796e-48
Identity = 88/129 (68.22%), Postives = 107/129 (82.95%), Query Frame = 1
Query:  148 DAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTK 534
            + KV    EVS HN  KDCWLII+GKVYDVT F++DHPGGDEVLLS+TGKDAT+DFEDVGHS +AR+MM++YY+GEID ST+P  + Y  P QP YNQDKT EF+I++LQFLVP+ ILGLA+ +R YTK
Sbjct:    4 EKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTK 132          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:  136 MGGGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI---DVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLV 486
            M   + K FT AEV+ HN  KD WL+I+  +YDVT FL +HPGG+EVL+   GKDAT++FEDVGHS  AR+MM +Y +GE+   + +++ +K E T   +    +     +++ L+  LV
Sbjct:    1 MSSEETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTWSTEQQTEESSVKSWLVPLVLCLV 120          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 62/128 (48.44%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  136 MGGGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI---DVSTIPKKKEYTPPKQPHYN-QDKTSEFIIRLLQFLVPLAILGL 507
            M   D K FT AEV+ +N     W II+  VYDVT FL +HPGG+EVL+   GKDAT+ FEDVGHS  AREMM QY VGE+   + S +P+K E      P +N + KT E  ++   +L+P  +LGL
Sbjct:    1 MSSEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEERSNVPEKSE------PTWNTEQKTEESSMK--SWLMPF-VLGL 119          
The following BLAST results are available for this feature:
BLAST of DR404317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CYB52_ARATH1.169e-6284.85Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_TOBAC1.429e-6080.45Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC2.064e-5979.70Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_ORYSJ2.790e-5676.12Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_BOROF4.759e-5678.29Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_CUSRE1.213e-5172.73Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB51_ARATH3.303e-4968.99Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB2.796e-4868.22Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_DROME1.397e-2343.33Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5_MUSDO9.058e-2348.44Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404317 ID=DR404317; Name=DR404317; organism=Citrus sinensis; type=EST; length=680bp
GGGGAGCCCGCAGTTTTATTTTCAGTGTCCTGACTTGAGTTTCAAAGCAC
ACCCATCTCCTTATATCTCTTTTCCCTTTTATCATTACCAGCTTCGGTTA
CGTACATTGTTGAAGAGAGCTGAAGGGAGCATACAATGGGTGGTGGTGAT
GCCAAGGTCTTCACTTTGGCTGAAGTATCTGATCACAACAACATGAAAGA
TTGTTGGCTCATCATCAATGGCAAGGTGTATGACGTGACAAAATTCTTGG
AAGATCATCCTGGAGGTGATGAAGTTTTGCTGTCTGCAACAGGGAAGGAT
GCCACGGATGACTTTGAAGATGTGGGTCATAGTCCGAGTGCCAGAGAAAT
GATGGACCAGTACTACGTCGGAGAGATTGATGTATCGACCATCCCAAAGA
AAAAGGAGTATACACCTCCAAAGCAGCCTCACTACAACCAGGACAAGACA
TCAGAGTTCATCATCAGGCTTCTCCAATTCCTTGTGCCGCTAGCAATCCT
GGGGTTGGCCGTCGGCATCCGGATTTATACAAAATCATCTTAATGTTCTA
GACTATGTTCTCATAACAGACAATTTGTGTCATCTTAATGTTCTAGATTA
TGTTATCATAACAGACAATTTGTGTTTTGTTAATGAAACTTTCTTAGTTC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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