DR404315

Overview
NameDR404315
Unique NameDR404315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4871 contig Csv1_Contig4871:26..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR404315 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.251e-18
Identity = 51/133 (38.35%), Postives = 68/133 (51.13%), Query Frame = 2 
Query:    2 KKSIWITVFLSINIISFALVSGCNTCV-------QXXXXXXXXXXXXXXXXXXDALKLGICAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXTCGKKLPSDFIC 379
            K S  + +F ++NI+ FALVS    C        +                  DALKLG+CA VL+     V+G+PP  PCCS+L+GL++LEAAVCLCTAIKA                   CGK++P+ F C
Sbjct:    4 KNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136
[Close]
BLAST of DR404315 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 44/127 (34.65%), Postives = 58/127 (45.67%), Query Frame = 2 
Query:   17 ITVFLSINIISFALVSGCNT-----CVQXXXXXXXXXXXXXXXXXXDALKLGICAKVLDGTVGAV-VGNPPDFPCCSVLQGLLDLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXTCGKKLPSDFIC 379
            + +FL+++++  A   GC        V                   DALKL +CAKVL    G V VG P    CC +L+GL+DL+AA+CLCTAIKA                   CG+  P DF C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL----GLVKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127
The following BLAST results are available for this feature:
BLAST of DR404315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
14KD_DAUCA1.251e-1838.3514 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
CCDP_MAIZE7.353e-1134.65Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404315 ID=DR404315; Name=DR404315; organism=Citrus sinensis; type=EST; length=570bp
CAAAAAATCTATATGGATTACTGTTTTCCTCTCTATCAATATTATCTCTT
TCGCACTTGTTAGTGGCTGTAACACTTGTGTTCAGCCAAGGCCAATCCCA
AACCCTAACCCAAATCCAACTTCAAGAAGATGCCCAAGAGATGCCCTAAA
GCTCGGCATATGTGCCAAAGTGCTTGATGGAACTGTTGGTGCAGTTGTCG
GGAACCCACCTGATTTTCCTTGTTGCTCAGTGCTACAGGGGCTTCTCGAT
CTTGAAGCTGCCGTGTGCCTTTGCACAGCCATTAAAGCTAACATCCTTGG
AATTAACATTAATATCCCCATTTCTTTGAGCTTGCTTATTAACACTTGCG
GGAAGAAGCTCCCTTCTGACTTCATTTGTGCCTAGGCGTATCTTTTTAAG
TTCCTGTTGGCATGCCGCTATATTGCGCACCAGGATACGTTTGTATTTTG
TTAAGTTGTTCTCTTGTAAGTGTTCAACAATCCTTGTTTCTCNNNTTACT
TTTCTCGTTAAAATTTACAATTGGATGTTGAGTTAAAAAAAAAAAAAAAA
AAAAANNAAAAAAAAAAAAA
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