DR404311

Overview
NameDR404311
Unique NameDR404311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6248 contig Csv1_Contig6248:3..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_ARATH (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3)

HSP 1 Score: 343.199 bits (879), Expect = 7.576e-94
Identity = 164/189 (86.77%), Postives = 176/189 (93.12%), Query Frame = 3
Query:   84 EIRQAIR-PSLQASRSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            EIRQ  R P+ Q +RS STALNYHLDSPDN PDLPW+FS+ N+ KVKEILS+YPSNYKQSAVIPLLDLAQQQ+GGWLPVSAMN VAK+IEVAPIRVYEVATFYSMFNR+KVGKYHLLVCGTTPCM+RGSR+IE ALL HLGVKR EVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNY+ED
Sbjct:   12 EIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFED 200          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.654e-48
Identity = 90/170 (52.94%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYED 195          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.654e-48
Identity = 90/170 (52.94%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYED 195          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.654e-48
Identity = 90/170 (52.94%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYED 195          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.654e-48
Identity = 90/170 (52.94%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYED 195          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_CAEEL (Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  123 RSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            R  +T L  H D+ +NN ++ +KF+  N+E++K I+  YP  +K  A+IPLLDLAQ+QHG WLP+SAM+EVAKI+EV  +R YEVATFY+MFNR  VGKY L VC TTPCM+RG+  I + + K LG+   E TKDGLF++ E+EC+G CVNAPMI + D          +Y+ED
Sbjct:   21 RGGATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQIND----------DYFED 184          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Bos taurus GN=NDUFV2 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 90/170 (52.94%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNP+ P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA+I++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED
Sbjct:   37 ALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYED 195          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Mus musculus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 88/170 (51.76%), Postives = 125/170 (73.53%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  ++ +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I + L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED
Sbjct:   36 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYED 194          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_RAT (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 88/170 (51.76%), Postives = 125/170 (73.53%), Query Frame = 3
Query:  138 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYED 647
            AL  H D+P+NNPD P+ F+  N E+++ I+ +YP  ++ +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I + L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED
Sbjct:   36 ALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------DYYED 194          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NDUV2_NEUCR (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-24 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.310e-45
Identity = 89/184 (48.37%), Postives = 129/184 (70.11%), Query Frame = 3
Query:  117 ASRSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVR--GSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDGHSET 662
            ++R  S  L  H ++PDNNPD+P+KFS  N++ ++EI+  YP  YK++AV+PLLDL Q+QHG +  +S MNEVA+++E+ P+RVYEVA+FY+M+NR+ VGK+H+  C TTPC +   GS  I  A+ +HLG+K+ E T DGLF+  E+EC+G C NAPM+ + D          +Y+ED   ET
Sbjct:   38 SARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHG-FCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVGKFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFIEVECLGACANAPMVQIND----------DYFEDLTPET 210          
The following BLAST results are available for this feature:
BLAST of DR404311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NDUV2_ARATH7.576e-9486.77NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]
NDUV2_PONPY1.654e-4852.94NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PANTR1.654e-4852.94NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_HUMAN1.654e-4852.94NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_GORGO1.654e-4852.94NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_CAEEL2.821e-4853.14Probable NADH dehydrogenase [ubiquinone] flavoprot... [more]
NDUV2_BOVIN3.684e-4852.94NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_MOUSE2.388e-4751.76NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_RAT3.119e-4751.76NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_NEUCR1.310e-4548.37NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245O21 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245O21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404311 ID=DR404311; Name=DR404311; organism=Citrus sinensis; type=EST; length=685bp
GGGGACCAAATCTGTGGCGTCACTCTTGTTGAGCTTAGAACTCGTCGAAA
ATGCTAGCTCGTCTCGCGGCCAAGCGTCTTCTCGAGATTCGTCAAGCAAT
CCGTCCATCTCTTCAGGCATCTCGATCTTTCTCCACTGCCCTGAACTATC
ATCTTGATTCTCCAGATAACAATCCGGACCTTCCGTGGAAGTTCTCTGAT
ACAAACAAAGAAAAGGTTAAGGAGATATTGTCTCACTATCCATCCAATTA
CAAGCAATCTGCTGTCATTCCACTGCTAGATCTTGCACAGCAGCAGCATG
GAGGGTGGCTTCCTGTTTCAGCAATGAATGAGGTAGCTAAAATTATAGAG
GTTGCTCCCATCCGTGTATATGAGGTTGCAACATTTTATTCAATGTTCAA
CAGATCAAAGGTAGGCAAATACCACCTACTGGTCTGTGGCACAACACCTT
GTATGGTACGTGGTTCACGAGAAATTGAAGATGCCTTACTGAAACACTTG
GGCGTGAAGCGCAATGAAGTAACTAAGGATGGCTTGTTCTCTGTTGGAGA
AATGGAATGCATGGGATGCTGTGTAAACGCTCCTATGATTACAGTGGCTG
ATTACTCCAATGGATCTGAAGGATATACTTACAATTATTATGAAGATGGT
CACTCCGAAACGAGTTATTGAGATAGTTGAANNGT
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