DR404310

Overview
NameDR404310
Unique NameDR404310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1367 contig Csv1_Contig1367:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 100/126 (79.37%), Postives = 114/126 (90.48%), Query Frame = 1
Query:   85 MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVA 462
            MA R  I    SALIAMIADEDTVVGFL+AGVGNVD+RRKT+YLIVDSKTT++QIEDAFKEF++R+DIAI+L+SQY+AN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L S ESV+
Sbjct:    1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVS 126          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32
Identity = 63/114 (55.26%), Postives = 91/114 (79.82%), Query Frame = 1
Query:  112 AASALIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 453
            A   ++A+I DEDTVVGFLL GVG ++  RK +YLIVD +TT+++IE+AF  F +R+DIAI+LI+Q++A  IR+ VD+H + IPA+LEIPSK+ PYDP++DS+L+R + L + E
Sbjct:    5 AKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 63/108 (58.33%), Postives = 87/108 (80.56%), Query Frame = 1
Query:  118 SALIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 441
            +AL+A+I DED V GFLLAGVG  D ++  ++L+VDSKT+  +IE AFK FT+R DIAI++I+Q VA+ IR+L+D +++ IP ILEIPSKDHPYDP +DSV+ +VK +
Sbjct:    9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKM 116          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 459
            LIA+I DEDTV GFLL G+G ++  R  ++L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 459
            LIA+I DEDTV GFLL G+G ++  R  ++L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 57/112 (50.89%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 459
            LIA+I DEDTV GFLL G+G ++  R  ++L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 57/112 (50.89%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 459
            LIA+I DEDTV GFLL G+G ++  R  ++L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_ANOGA (V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDR 471
            LI++I DEDT VGFLL GVG ++  R  ++++VD  T + +IED FK F  R+DI I+LI+Q  A  IR ++DSH  P PA+LEIPSKDHPYD ++DS+L R K + + E + ++R
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 54/112 (48.21%), Postives = 82/112 (73.21%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 459
            LI++I DEDT VGFLL G+G ++  R  ++++VD  T + +IE+ FK F  R+DI I+LI+Q VA  +R ++D+H  P+P++LEIPSKDHPYD ++DS+L R K + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMFNPEDL 122          
BLAST of DR404310 vs. ExPASy Swiss-Prot
Match: VATF1_DROME (V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 55/112 (49.11%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  124 LIAMIADEDTVVGFLLAGVGNVDLRRKTSYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 459
            LI++I DEDT VGFLL GVG ++  R  ++++VD  T + ++ED FK F  R+DI I+LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
The following BLAST results are available for this feature:
BLAST of DR404310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF_ARATH4.650e-5179.37V-type proton ATPase subunit F OS=Arabidopsis thal... [more]
VATF_CAEEL6.314e-3255.26Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_DICDI3.133e-3158.33V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT1.555e-3051.79V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE1.555e-3051.79V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_BOVIN3.464e-3050.89V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN4.525e-3050.89V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_ANOGA1.008e-2950.86V-type proton ATPase subunit F OS=Anopheles gambia... [more]
VATF_MANSE1.114e-2848.21V-type proton ATPase subunit F OS=Manduca sexta GN... [more]
VATF1_DROME1.114e-2849.11V-type proton ATPase subunit F 1 OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245O20 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245O20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404310 ID=DR404310; Name=DR404310; organism=Citrus sinensis; type=EST; length=683bp
GGGGGAACCAAAGCTGTGCGAGGAGTTGAGCTCGAACAAAAGACGCAAGG
TGCTGTATTCGTAGCTGAATTTAATTTATGCAGCATGGCTAATAGACCTC
AAATACGTACCGCTGCCTCGGCGCTCATCGCTATGATCGCAGATGAGGAC
ACTGTAGTTGGATTTTTGCTTGCTGGAGTTGGGAATGTTGACTTGCGGAG
GAAGACAAGTTACCTTATTGTGGACTCAAAAACAACTATAAAGCAAATTG
AAGATGCATTTAAAGAGTTCACATCCAGGGAGGATATCGCAATAGTTCTA
ATTAGCCAATATGTTGCAAACAGGATAAGGTTTTTGGTTGATAGCCATAA
CAAGCCGATCCCTGCAATTTTGGAGATACCTTCCAAGGATCATCCGTATG
ATCCTGCACAAGATTCAGTTCTTTCACGAGTGAAGAACCTCGTCTCTGTA
GAATCTGTGGCATCTGACAGGCGCTGAGCTTAGATATACAGTGGTGTCTC
TGTTTAATCTCCTTTCCCTCGACTGCATATTTATATAGTTACATATATGA
TTCTTCCTATATTTGTACTTGGGTAATTTTTCTACCAACTATTCATGAAC
TCTGGTGAAGAAATAGTAGTTTGGATACAAGTTGTGTTTTATATGTATGT
ATTTGTGTGCATAATACACGGTGGCTTTGGACT
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