CX070148

Overview
NameCX070148
Unique NameCX070148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_ARATH (Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.018e-56
Identity = 110/180 (61.11%), Postives = 131/180 (72.78%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESREPTQSPATL 543
            TLGS+PAA LLEKLKP YWFSAHLHCKFAA VQHG D  VTKFLALDKCLP +KFLQ+ EIES  GP+E+ YDEEWLAITR FNS+FPLT +  N       + + R+WVR +L+ER  KPFEF RTVP Y+ SQ +   +  E PQNPQT S L+ L LP L +++  + E T  PA+L
Sbjct:  204 TLGSKPAALLLEKLKPQYWFSAHLHCKFAAAVQHGNDGSVTKFLALDKCLPGKKFLQIIEIESEPGPFEVLYDEEWLAITRKFNSIFPLTRRYTNV-STAGTIQESREWVRKKLEERQFKPFEFARTVPAYNPSQRV-FDSIPEIPQNPQTLSLLELLGLPYLLDSSPVTGERTDIPASL 381          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_ORYSJ (Lariat debranching enzyme OS=Oryza sativa subsp. japonica GN=DBR1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 106/167 (63.47%), Postives = 121/167 (72.46%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENA 504
            TLGSEPAA+LL KLKP YWFSAHLHCKF AV+QHGE  P TKFLALDKCLPRR FLQV +I SG GP+EIQYDEEWLAITR FN+VF LT         Q D  D  QWVR++L  RGAKP +FV+T   YD S   S  +   + +NPQTESFLQ L LP L +++
Sbjct:  204 TLGSEPAARLLNKLKPPYWFSAHLHCKFPAVIQHGEGGPTTKFLALDKCLPRRGFLQVIDIPSGPGPHEIQYDEEWLAITRKFNNVFSLTRMPFTMLDEQVDTQDDLQWVRNKLNARGAKPIDFVQTAASYDPSCQASNPSITVHCRNPQTESFLQLLNLPYLLDSS 370          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_XENTR (Lariat debranching enzyme OS=Xenopus tropicalis GN=dbr1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 75/197 (38.07%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQH-----GEDSPVTKFLALDKCLPRRKFLQVFEIESGQG-PYEIQYDEEWLAITRTFNSVFPLTSQSANF---GGV--QHDMNDCRQWVRSRLQERGAK---PFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESREPTQSPATLDHK 552
            TLGS  A++LL  ++PSYWFSAHLH KFAA +QH     GE    TKFLALDKCLP R+FLQ+ ++E   G P  ++YD EWLA+ +    +  +TS++ N     G+  + D +   +  R  L + G     P  F  T  CYD +        A +  NPQT  F   L L +L     +  E      T D++
Sbjct:  204 TLGSPAASELLLHIQPSYWFSAHLHVKFAAFMQHQTNVEGEIPKATKFLALDKCLPHREFLQIVDVEHDPGKPDCLEYDLEWLAVLKATKDLLNITSKTWNMPENNGLHSRWDFSASEKTKREILDDLGHDIKIPCNFCMTTACYDPNNP-QYKRVATHIVNPQTTEFCARLGLVDLNAKIRQHEEEGDIDITEDNE 399          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_DANRE (Lariat debranching enzyme OS=Danio rerio GN=dbr1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 71/178 (39.89%), Postives = 96/178 (53.93%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDS----PVTKFLALDKCLPRRKFLQVFEIESGQGPYE-IQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAK-----------PFEFVRTVPCYDASQSL--SIGAFAENPQNPQTESFLQFLEL 483
            TLGS  AA LLE L+PSYWFSAHLH KFAA++QH   +     +TKFL+LDKCLP R FLQ+ E+    G  E ++YD EWLAI +  ++   L   + NF     D     +W  S  +E   +           P  F  TVP YD SQ    ++ A++ NPQ  +  + L   ++
Sbjct:  204 TLGSPAAADLLEHLQPSYWFSAHLHVKFAALMQHEAKNNTAPKITKFLSLDKCLPHRDFLQIVEVADRPGSSEQLEYDPEWLAILKATDN---LQKPTCNFWNPPQDNGLHSRWDFSASEEAMMEVVSDLSGDLCIPENFSLTVPPYDPSQPQPHALPAYSTNPQTTELCATLNLTDI 378          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_HUMAN (Lariat debranching enzyme OS=Homo sapiens GN=DBR1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 72/190 (37.89%), Postives = 97/190 (51.05%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQH-----GEDSPVTKFLALDKCLPRRKFLQVFEIE-SGQGPYEIQYDEEWLAITRTFNSVFPLTSQSAN------------FGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESRE 519
            TLGS  A++LLE LKP+YWFSAHLH KFAA++QH     G+ +  TKFLALDKCLP R FLQ+ EIE     P  ++YD EWL I R  + +  +T +  N            +   +  M +    V  +L      P  F  T  CYD S+  +         NPQT  F   L + ++     +S+E
Sbjct:  204 TLGSPAASELLEHLKPTYWFSAHLHVKFAALMQHQAKDKGQTARATKFLALDKCLPHRDFLQILEIEHDPSAPDYLEYDIEWLTILRATDDLINVTGRLWNMPENNGLHARWDYSATEEGMKE----VLEKLNHDLKVPCNFSVTAACYDPSKPQTQMQLIHR-INPQTTEFCAQLGIIDINVRLQKSKE 388          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1B_XENLA (Lariat debranching enzyme B OS=Xenopus laevis GN=dbr1-B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 70/186 (37.63%), Postives = 98/186 (52.69%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQH-----GEDSPVTKFLALDKCLPRRKFLQVFEIESGQGPYE-IQYDEEWLAITRTFNSVFPLTSQSANF---GGV--QHDMNDCRQWVRSRLQERGAK---PFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESRE 519
            TLGS  A++LL  ++PSYWFSAHLH KFAA +QH     GE    TKFLALDKCLPRR+FLQ+ ++E      E ++YD EWL++ +    +  +T  + N     G+  + D +   +  R  + + G     P  F  T  CYD +        A +  NPQT  F   L L +L     ++ E
Sbjct:  204 TLGSPAASELLLHIQPSYWFSAHLHVKFAAFMQHQTNVDGEIPKATKFLALDKCLPRREFLQIVDVEHDSAKSECLEYDLEWLSVLKATKDLLNITPNTWNMPENNGLHSRWDFSASEETKREVVSDLGHDLKIPCNFSMTTACYDPNNP-QYKRVATHIVNPQTTEFCARLGLVDLNAKICQNEE 388          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_CHICK (Lariat debranching enzyme OS=Gallus gallus GN=DBR1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.799e-23
Identity = 69/186 (37.10%), Postives = 97/186 (52.15%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDS-----PVTKFLALDKCLPRRKFLQVFEIESGQGPYE-IQYDEEWLAITRTFNSVFPLTSQS-----ANFGGVQHDMNDCRQWVRSRLQERGAK---PFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESRE 519
            TLGS  A++LL+ LKP+YWFSAHLH KFAA +QH   S       TKFLALDKCLP R FLQ+ +IE      + ++YD EW+A+ +  NS+  +T  S      N    + D +   + ++  L+E       P  F  T  CYD S+         +  NPQT  F     L ++ +   + +E
Sbjct:  204 TLGSPAASELLQHLKPNYWFSAHLHVKFAAFMQHETKSKEELPKATKFLALDKCLPHRDFLQIIDIEHDPTAGDSLEYDAEWIAVLKATNSLINVTQSSWSVPENNGLHAKWDYSATEEAIKEVLEELNHNLKIPCNFTLTTTCYDPSKPQK-NMEPVHTINPQTTEFCAQFGLTDINDRIQQVKE 388          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_MOUSE (Lariat debranching enzyme OS=Mus musculus GN=Dbr1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.280e-22
Identity = 70/190 (36.84%), Postives = 94/190 (49.47%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQH-----GEDSPVTKFLALDKCLPRRKFLQVFEIE-SGQGPYEIQYDEEWLAITRTFNSVFPLTSQSAN------------FGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESRE 519
            TLGS  A++LLE L+P+YWFSAHLH KFAA++QH      +    TKFLALDKCLP R FLQV EIE     P  ++YD EWL + R  + +  +T    N            +   +  M +    V  +L      P  F  T  CYD S+  +         NPQT  F   L + ++     ++RE
Sbjct:  204 TLGSPAASELLEHLQPAYWFSAHLHVKFAALMQHQATDKDQAGKETKFLALDKCLPHRDFLQVLEIEHDPSAPEYLEYDVEWLTVLRATDDLINVTGGLWNMPEDNGLHTRWDYSATEETMKE----VMEKLNHDPKVPCNFTMTAACYDPSKPQTQVKLVHR-INPQTTEFCAQLGITDINVMIQKARE 388          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1A_XENLA (Lariat debranching enzyme A OS=Xenopus laevis GN=dbr1-A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.851e-22
Identity = 69/176 (39.20%), Postives = 93/176 (52.84%), Query Frame = 1
Query:    4 TLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQH----GEDSPVTKFLALDKCLPRRKFLQVFEIESGQG-PYEIQYDEEWLAITRTFNSVFPLTSQSANFG-----GVQHDMNDCRQWVRSRLQERGAK---PFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNL 492
            TLGS  A++LL  ++PSYWFSAHLH KFAA +QH    GE    TKFLALDKCLP R+FLQ+ ++E     P  ++YD EWLA+ +    +  +TS++ N         + D +   +  R  L + G     P  F  T  CYD +          +  NPQT  F   L L +L
Sbjct:  204 TLGSPAASELLLHIQPSYWFSAHLHVKFAAFMQHQNNVGEIPKATKFLALDKCLPHREFLQIVDMEHDPSKPECLEYDLEWLAVLKATKDLLNITSKTWNMPENNGLHARWDFSMSEETKREVLDDLGHDIKIPCNFSVTTACYDPNNP-QYKRMPTHIVNPQTTEFCARLGLVDL 378          
BLAST of CX070148 vs. ExPASy Swiss-Prot
Match: DBR1_DROME (Lariat debranching enzyme OS=Drosophila melanogaster GN=ldbr PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 72/212 (33.96%), Postives = 102/212 (48.11%), Query Frame = 1
Query:    1 GTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDS-------------------------------------PVTKFLALDKCLPRRKFLQVFEIESG--QGPYEIQYDEEWLAITRTFNSVFPLT--------------SQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYD-ASQSLSIGAFAENPQ---NPQTESF 465
            G LGS+P  +LL+ ++P+YWF+AHLHCKFAA+V H                                         PVTKFLALDKCLPRR FLQV E+ S   +G   ++YD EWLAI  + N +  +               ++ +NF   + ++    + V ++ Q+    P  F RTVP +D A QS     F + P+   NPQ+ +F
Sbjct:  203 GKLGSQPLEELLKAVQPAYWFAAHLHCKFAALVPHNHSQKLGDAESSSSSSSSEDEDEEREKVKKAAPVPPPSKSVPVTKFLALDKCLPRRAFLQVVEVPSDPIEGTPRLEYDAEWLAILHSTNHLISVKENYYYLPGKKAGEFTERSNFTPTEEEL----EAVTAKFQKLQV-PENFERTVPAFDPAEQSDYKHMFVDQPKVQLNPQSNTF 409          
The following BLAST results are available for this feature:
BLAST of CX070148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DBR1_ARATH3.018e-5661.11Lariat debranching enzyme OS=Arabidopsis thaliana ... [more]
DBR1_ORYSJ9.708e-5563.47Lariat debranching enzyme OS=Oryza sativa subsp. j... [more]
DBR1_XENTR5.196e-2438.07Lariat debranching enzyme OS=Xenopus tropicalis GN... [more]
DBR1_DANRE8.863e-2439.89Lariat debranching enzyme OS=Danio rerio GN=dbr1 P... [more]
DBR1_HUMAN1.974e-2337.89Lariat debranching enzyme OS=Homo sapiens GN=DBR1 ... [more]
DBR1B_XENLA7.503e-2337.63Lariat debranching enzyme B OS=Xenopus laevis GN=d... [more]
DBR1_CHICK9.799e-2337.10Lariat debranching enzyme OS=Gallus gallus GN=DBR1... [more]
DBR1_MOUSE1.280e-2236.84Lariat debranching enzyme OS=Mus musculus GN=Dbr1 ... [more]
DBR1A_XENLA2.851e-2239.20Lariat debranching enzyme A OS=Xenopus laevis GN=d... [more]
DBR1_DROME8.295e-2233.96Lariat debranching enzyme OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15A09-B17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070148 ID=CX070148; Name=CX070148; organism=Citrus sinensis; type=EST; length=829bp
GGGACTCTAGGAAGTGAACCTGCAGCTCAACTGTTGGAAAAATTAAAACC
TTCTTATTGGTTTTCGGCTCACCTTCACTGTAAATTTGCTGCTGTTGTGC
AACATGGAGAAGACAGTCCAGTTACAAAATTTCTTGCGCTTGATAAGTGT
CTTCCAAGGCGCAAATTCTTACAGGTTTTTGAAATTGAATCGGGACAAGG
ACCTTATGAGATTCAGTATGACGAGGAATGGCTGGCTATAACACGGACCT
TCAACTCTGTCTTCCCTTTGACCTCGCAAAGTGCAAATTTCGGGGGTGTT
CAGCATGACATGAATGATTGTCGTCAATGGGTCAGAAGCAGGCTACAAGA
AAGAGGAGCCAAACCTTTCGAGTTTGTACGGACAGTTCCCTGTTATGATG
CCTCTCAATCTCTGTCTATTGGTGCCTTTGCTGAAAATCCTCAGAATCCA
CAAACAGAGTCTTTCTTGCAGTTTCTAGAACTTCCGAATCTTTTTGAAAA
TGCATTAGAATCAAGAGAGCCAACCCAGAGTCCTGCCACTTTGGATCATA
AAGGTCCTGATCTTGATCCTGAAGAAATTCCTATTGATGATGAGGATGAA
TTAGAAGAACTTGATGAATAGGATGATGCAGCTGCGGAGAGTGAAAAGTT
ATGAAGATTCTTTGTACATAATAAGTCACTATCACTATCTCTTCTTCTCT
GTAAAAACATTTTTCTTACCCCAGATGAAATGTGTGGCTGTTACCATTTC
ACTGAGAATTGTCAGGCTTTTGGCTTCTCATTGACCTTTTTGTGTGCTTG
CTGGCAATGCATCACTTTGTAATCTGTAA
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