CX070126

Overview
NameCX070126
Unique NameCX070126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070126_ssr186 microsatellite CX070126_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4299 contig Csv1_Contig4299:12..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX070126 vs. ExPASy Swiss-Prot
Match: CHFR_PONAB (E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:  443 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV 733
            E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +D+   I  +++
Sbjct:  208 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDML 298
[Close]
BLAST of CX070126 vs. ExPASy Swiss-Prot
Match: CHFR_MOUSE (E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:  443 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV 733
            E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +D+   I  +++
Sbjct:  299 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVRSMDARNKITQDML 389
[Close]
BLAST of CX070126 vs. ExPASy Swiss-Prot
Match: CHFR_HUMAN (E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:  443 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV 733
            E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +D+   I  +++
Sbjct:  300 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDML 390
[Close]
BLAST of CX070126 vs. ExPASy Swiss-Prot
Match: CHFR_XENTR (E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 2 
Query:  443 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV 733
            E   C IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+   +D+   I  +++
Sbjct:  263 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDML 353
[Close]
BLAST of CX070126 vs. ExPASy Swiss-Prot
Match: CHFR_XENLA (E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 2 
Query:  443 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV 733
            E   C IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+   +D+   I  +++
Sbjct:  262 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDML 352
[Close]
BLAST of CX070126 vs. ExPASy Swiss-Prot
Match: CHFR_DANRE (E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 30/97 (30.93%), Postives = 55/97 (56.70%), Query Frame = 2 
Query:  443 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV 733
            E   C IC ++ +D ++V PC+H FC  C+S W+ RS        CP CR  V+ + +NH L+N+ ++ L  H    R+++++  +D+   I  +++
Sbjct:  273 ESLTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSS------FCPTCRCPVERIRKNHILNNLVEAYLLQHPEKCRTEDDLRSMDARNKITQDML 363
The following BLAST results are available for this feature:
BLAST of CX070126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CHFR_PONAB5.440e-1436.08E3 ubiquitin-protein ligase CHFR OS=Pongo abelii G... [more]
CHFR_MOUSE5.440e-1436.08E3 ubiquitin-protein ligase CHFR OS=Mus musculus G... [more]
CHFR_HUMAN5.440e-1436.08E3 ubiquitin-protein ligase CHFR OS=Homo sapiens G... [more]
CHFR_XENTR6.015e-1335.05E3 ubiquitin-protein ligase CHFR OS=Xenopus tropic... [more]
CHFR_XENLA6.015e-1335.05E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis... [more]
CHFR_DANRE3.899e-1230.93E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14H09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14H09-O18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070126 ID=CX070126; Name=CX070126; organism=Citrus sinensis; type=EST; length=756bp
CATAACCAACGGAAGAAGAGAGGGGAGGTTTTGGATCAAAATACAAGTCA
AAGTTATGGCTGAAGTTGGCGAATGCTCTGCGTCTAAACCCTCTCGTGAA
ATCTGGGCAAAGCTTGAACCATCAGACTCAAGGTTTGCCGATGTTGACAT
AAGCTCAAATGAGGTGGTTATATGCTCAGAGATCACTTCTTCTTCTTCTG
ACAAACATGAATGGTGCAAAATTACTAGGAATTCTGATCTACATTCAGCT
AAGATGCAAAATAAAAGTTCAAATGCTATACTTGTCGATGATACCATGGT
CCAAAATGAAGAGGTCGTTGACATTAAGTGTGGAACTGAAATTATTCCTG
GCCCTGATAGAGAAGTATATTTGAACTTCAGATTTAAAGTAGTACCTGTA
CAAGAATCCAGCAATCAGCAATTGGAGATTTCCATTGACATCGAGCATGC
AAAATGCTGCATCTGCTTGAATATATGGCATGATGTTGTTACAGTTGCTC
CTTGCCTTCATAATTTCTGCAATGGATGCTTCTCTGAGTGGTTAAGACGA
TCACAGGAAAAACGTTCGACTGTACTTTGTCCGCATTGTAGAGCAGTTGT
ACAATTTGTTGGAAGAAACCATTATTTGCATAATATTGAGCAGAGTATAC
TACAAGCTCATTCTTCACTTAGGCGTTCTGATGAAGAAGTTGCACTTCTT
GATTCCTATGCGTATATAAAATCAAATCTTGTAATTAGGAATGGAAAGAA
ACATCG
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