CX070100

Overview
NameCX070100
Unique NameCX070100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:466..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX070100 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.382e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 3 
Query:  102 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQANSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 542
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CX070100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.382e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14G05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G05-M10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070100 ID=CX070100; Name=CX070100; organism=Citrus sinensis; type=EST; length=771bp
CAGTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTTTCTTGTAGGAGAG
AGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAATTTGGTAGCTTAA
AATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTCCAGAGGAGCTGG
TGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACATCGACGGCACTG
GTCGACCGTTTCCTCCAGGCCAACTCGTCTGCTGTGTCCGTACAGGTCGG
GGACAACGTCACCCTCGCGTACACTCATCAGAACGAGTCTCCTTTACGGC
AAAGATCATTTGCTGTGAAAGATGAGATCTTCTGCTTGTTTGAGGGAGCA
CTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACTAGCTAAGTCGGC
AAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTCTGCGTGATCGGG
CCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGTGGGTACTTTGCC
TTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTGTGGCTTCTGACCA
ATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCTGATGGACATGTTG
CCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTGCGGCAAGTCACTT
GCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAGTTGGAGGACTGAG
AAGCTTTGAGAATCCAAAGAACAAGATCACTGCAGTTCCTGCTGCGGAAG
AAGAGATCTGGGGTGCTACAT
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