CX070099

Overview
NameCX070099
Unique NameCX070099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:100..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX070099 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.101e-24
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = -1 
Query:  593 HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 859
            H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   60 HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CX070099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.101e-2456.18Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G05-M10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070099 ID=CX070099; Name=CX070099; organism=Citrus sinensis; type=EST; length=859bp
CTTTTTTTTTAGTTCGAACACTGGGACAAGACTTTATTAAACAGCAAACA
TAACTGTACATTGGACCACACTGGATAAAAGGTTAATTTGAAAGCAAACA
CCTAAGAAACTTGAAAGGAGCTATAGCTACAAAGAAAGCTGGGTGCTACA
TTTCTCACAAGCATACACTATTTCCATTCCAGTTGATATTTTGCTACACT
CATTTTGTTATTCACATGGACCCTCTTGCAGCTTGCATCCCCACAAACTT
TTTTTCCCCCAAACCGCCGATTTTTAACTGTTGGCTAATATCTCAAGTCG
AGAAGAAATATCTTCTAGCCTTCTACTCTGTGGCTGCAAGAACTGCTGGC
CCTTCCACCTTAAATGTAGCACCCCAGATCTCTTCTTCCGCAGCAGGAAC
TGCAGTGATCTTGTTCTTTGGATTCTCAAAGCTTCTCAGTCCTCCAACTG
CTGTTGAGAAGAAACAACCTTGAGGGAAAGAAGCAAGTGACTTGCCGCAA
GCACCTTTGAGCAAGTCAGCATCATCAGCAAAGGCAACATGTCCATCAGC
AGTGATTCCCCAATAAAGAGGAACCTTACCAAATTGGTCAGAAGCCACAA
ACAAGGTGGAGGTGGACTTGTCGTAGACAATGAAGGCAAAGTACCCACTA
AGGTGGCCAACGACATGGTTCGGTGGGTAAGGGGCCCGATCACGCAGAGC
CTTGTATGCCTCAATCACCAAGATCACTTCATTTGCCGACTTAGCTAGTC
CATATTGCTGCCTCAGGCTTCCCAAGTTATCAAGTGCTCCCTCAAACAAG
CAGAAGATCTCATCTTTCACAGCAAATGATCTTTGCCGTAAAGGAGACTC
GTTCTGATG
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