CX070089

Overview
NameCX070089
Unique NameCX070089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: NOLC1_HUMAN (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.019e-20
Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = -1
Query:  146 KSGRTESKNDRNK--TSEEDTTDKERKGSKKRKR--------LASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANG-----SAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 667
            K G+ ES N  +   +SEE+    + KGS + +         L ++   +  N + E EE K+     S+   +   + N   K  E     K + +  N        E ++   F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +S+KF+
Sbjct:  510 KKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 697          
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: NOLC1_RAT (Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.751e-19
Identity = 59/178 (33.15%), Postives = 93/178 (52.25%), Query Frame = -1
Query:  146 QKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKIN---DDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 670
            + S   E K  ++K + +    K       +   A +E + E  D  + +++   K    ++ K N   D+      K  +   PN   K++     E ++   F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +SVKF+
Sbjct:  529 EDSSEEEKKKPKSKATPKPQAGKANGVPASQNGKAGKESEEEEEDTEQNKKAAGTKPGSGKKRKHNETADEAATPQSKKVKLQTPNTFPKRK---KGEKRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 702          
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: SRP40_YEAST (Suppressor protein SRP40 OS=Saccharomyces cerevisiae GN=SRP40 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15
Identity = 57/180 (31.67%), Postives = 86/180 (47.78%), Query Frame = -1
Query:  149 SGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQAN------GSAEPKSV--KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 664
            S  ++S +D + +S+ D++      S      + E   S+ +D     +S       ++E   ++ +   T  +  +S P+ +    AN      G+ E K    K F RV   ++ F    L DN+Y    GA   +G KA E LG+VRG+DF   K K KRGSYRGG I L+S S KF
Sbjct:  229 SSSSDSDSDSDSSSDSDSSGSSDSSSSSDSS-SDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASSNESTPSASSSSSANKLNIPAGTDEIKEGQRKHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLESGSYKF 404          
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: YNY5_SCHPO (LisH domain-containing protein C1711.05 OS=Schizosaccharomyces pombe GN=SPBC1711.05 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.755e-11
Identity = 54/194 (27.84%), Postives = 79/194 (40.72%), Query Frame = -1
Query:  149 EIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPN--------KTRKKQANGSAEPKSVKAFQRVKV--------DEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 682
            E   + S  + + +D    S  D++D E + S +     S   DS+ +   E   S    T   E         N T   E  S  +        K+ K++        S K+ +  K          + +F    L+DNS+  +D     YG  A   L   RG+ FR EK KKKRGSYRGG+I+ +  S KF
Sbjct:  264 ESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSA--QSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFASPALRDNSFNFEDD----YGTLANRDLIVTRGKGFRQEKNKKKRGSYRGGRINTEVRSFKF 451          
The following BLAST results are available for this feature:
BLAST of CX070089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NOLC1_HUMAN6.019e-2033.86Nucleolar and coiled-body phosphoprotein 1 OS=Homo... [more]
NOLC1_RAT1.751e-1933.15Nucleolar and coiled-body phosphoprotein 1 OS=Ratt... [more]
SRP40_YEAST7.614e-1531.67Suppressor protein SRP40 OS=Saccharomyces cerevisi... [more]
YNY5_SCHPO1.755e-1127.84LisH domain-containing protein C1711.05 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14F11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F11-K22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070089 ID=CX070089; Name=CX070089; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTAAGCAACTACCAAAAACCAGAACAAAAATTAATAGCAGATCTAT
GAAGACAGTATACATAAAGCAATAACAACGAAGATGAACTAAATGAATCG
GACTTTGCCACACAAAAACGTCACTGGTCATTCTTCATCAGAATAATTGA
ACTTAACAGAATGTGATTGAAGATCAATCTGCCCTCCCCTATAGCTCCCA
CGCTTCTTTTTGGTCTTTTCATGCCTGAAATCCCTTCCTCTAACTTGCCC
AAGAACTTCTTGTGCTTTTGCACCATAACCAATCTCCGCACCATCCTTTG
CCCAGTACGAATTATCTTTAAGCCTTTCATCAGTAAATTCCACTTCATCA
ACTTTTACCCTCTGAAATGCTTTAACCGATTTTGGCTCCGCTGAACCATT
TGCTTGCTTCTTCCTCGTCTTATTTGGGGCAGATTTCTCTTCATTTTTAT
CAGTCCCATTTACTTGATCATCATTTATCTTCAGTTCTTCTGAACCTTCT
GTCTTCCTACGTTTGGATTCTTCAACTTCCATTTTGTCATTAGGCTCAGA
ATCTTTTTCCTCAGAAGCCAATCTTTTCCTTTTCTTGGAGCCTTTCCTCT
CCTTATCAGTTGTGTCTTCCTCTGATGTCTTATTACGATCATTTTTGGAC
TCAGTTCTACCTGATTTCTGTTCACCAATCTCTTTAGAATCCACATCAAA
TGAACTTTTGGAAACAGAACCGTCCTTCTGTTTCTTCTTACCTTTATCTT
TGACACTTTCATCTTCCACTGAAGCAATGTTACCATTTGTTGCCGTAGTT
TCAGTAGCTAGGAAATCCCTTGCAGATTCAGACTC
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