CX070084

Overview
NameCX070084
Unique NameCX070084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11295 contig Csv1_Contig11295:69..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_SYNY3 (Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803) GN=ilvH PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.427e-44
Identity = 93/155 (60.00%), Postives = 124/155 (80.00%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 694
            HT+SV V DE+G++ RIAG+FARRG+NIESLAVG  +  D +  T+VV G +  ++Q+ +QL KLVNV+KV+D++  P VERELML+KV+A+   RAE+  L  +FRA+IVDISE ++TIEV GDPGKMVA+ + L+KFGI+E+ARTGKIAL RE
Sbjct:    3 HTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLTKQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVTIEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRE 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_CYACA (Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.478e-41
Identity = 87/154 (56.49%), Postives = 120/154 (77.92%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            +T+SV V DE+G++ RIAG+FARRG+NIESLAVG  + K +   T+VV G D+ ++Q+ +QL KLVN+LKV++++  P VEREL+L+K+NA    R EI  ++ +FRAK+VD+SE  L +E+TGDPGK+ A+Q+ L KFGI EIARTGKIAL R
Sbjct:    3 YTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLTKQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLVLELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTR 156          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_GUITH (Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.300e-41
Identity = 90/155 (58.06%), Postives = 118/155 (76.13%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 694
            HT+SV V DESG++ RIAG+FARRG+NIESLAVG  +   +   T+VV   ++ ++Q+ +QL KLVN+LKVED++N P VERELMLIK+      R E   +++IFRAK+VD+SE  L IEVTGDPGK+VA+++ LSKF I EI RTGKI+L RE
Sbjct:    3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISRITMVVPSDERTIEQLTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDFLIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRE 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_GALSU (Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.579e-41
Identity = 84/155 (54.19%), Postives = 119/155 (76.77%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 694
            HT+SV V DESG++ RI+G+FARRG+NI+SLAVG  +   +   T+V+ G +++++Q+ + L KLVNVLK++D++N P VERELMLIKV      R EI  + +IFRA++VD+SE  + +E+TGDPGK+ A+++ L K+GI EIARTGKIAL RE
Sbjct:    3 HTLSVLVEDESGVLTRISGLFARRGFNIDSLAVGPAEKAGISRITMVIRGDNRIIEQITKHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFIILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRE 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_PORYE (Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 88/154 (57.14%), Postives = 119/154 (77.27%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            HT+SV V DE+G+++RI+G+FARRG+NI SLAVG  +   +   T+VV G ++ ++Q+ +QL KLVN+L V+D++N P VERELMLIK+  + + R E   +V IFRAKIVDI+E  L IEVTGDPGK+VA+++ L+KFGI EIARTGKI L R
Sbjct:    3 HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLIIEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVR 156          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_PORPU (Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.082e-39
Identity = 84/154 (54.55%), Postives = 119/154 (77.27%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            HT+SV V DE+G+++RI+G+FARRG+NI SLAVG  +   +   T+VV G ++ ++Q+ +QL KLVN+L V+D++N P VERELMLIK+  + + R E   +V IFRA +VDI+E  + +EVTGDPGK+VA+++ L+KFGI EIARTGKI+L R
Sbjct:    3 HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLIIVEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVR 156          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_MYCTU (Acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.855e-35
Identity = 77/158 (48.73%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN--KDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLG 703
            HT+SV V D+ G++ R+A +F+RRG+NIESLAVG    KD++  TIVV   D  L+Q+ +QL KL+NV+K+ +  +E  V REL LIKV AD   R+++   V++FRA ++D+S  SLT+E TG+ GK+ A+ R L  FGIREIA++G ++L R   G
Sbjct:    6 HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_MYCBO (Acetolactate synthase small subunit OS=Mycobacterium bovis GN=ilvH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.855e-35
Identity = 77/158 (48.73%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN--KDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLG 703
            HT+SV V D+ G++ R+A +F+RRG+NIESLAVG    KD++  TIVV   D  L+Q+ +QL KL+NV+K+ +  +E  V REL LIKV AD   R+++   V++FRA ++D+S  SLT+E TG+ GK+ A+ R L  FGIREIA++G ++L R   G
Sbjct:    6 HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_ARCFU (Probable acetolactate synthase small subunit OS=Archaeoglobus fulgidus GN=ilvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.649e-34
Identity = 79/154 (51.30%), Postives = 112/154 (72.73%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            HTI+V V ++ G++ R+AG+F RRG+NIESL VG  +  D +  TIVV G DKV++QV++QL KL+  +KV +++ E  VEREL LI+V+A P+ R EI  L +IFRA+IVD+S  S  IEVTGD  K+ A    + ++GI+E+ARTGK+A+ R
Sbjct:    3 HTIAVLVENKPGVLARVAGLFRRRGFNIESLTVGTTERDDLSRMTIVVEGDDKVVEQVIKQLNKLIETIKVSEIT-ESSVERELCLIRVHAPPEKRGEIVELTNIFRARIVDVSRDSFIIEVTGDEDKVSAFIDLMRQYGIKELARTGKVAMVR 155          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_AQUAE (Acetolactate synthase small subunit OS=Aquifex aeolicus GN=ilvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.765e-32
Identity = 77/156 (49.36%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKV-NADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 694
            H I+V V +E G++ RIA + A +GYNIE L+VG   +K +   TI V G D V++QV++QL++L++ LKV DL++ P VEREL LIKV     + R E+  + +IFR K+VD+S  + TIEVTGD  K+ A+   L  FGI+E+ARTGK+A+RRE
Sbjct:   28 HIITVKVRNEMGVLARIATLIAGKGYNIEGLSVGETHEKGISRMTIEVIGDDIVIEQVVKQLRRLIDTLKVSDLTDVPHVERELALIKVYTPSSRARDEVLRITEIFRGKVVDVSPDTYTIEVTGDEDKINAMIELLKPFGIKEMARTGKVAMRRE 183          
The following BLAST results are available for this feature:
BLAST of CX070084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ILVH_SYNY35.427e-4460.00Acetolactate synthase small subunit OS=Synechocyst... [more]
ILVH_CYACA1.478e-4156.49Acetolactate synthase small subunit OS=Cyanidium c... [more]
ILVH_GUITH4.300e-4158.06Acetolactate synthase small subunit OS=Guillardia ... [more]
ILVH_GALSU9.579e-4154.19Acetolactate synthase small subunit OS=Galdieria s... [more]
ILVH_PORYE4.754e-4057.14Acetolactate synthase small subunit OS=Porphyra ye... [more]
ILVH_PORPU3.082e-3954.55Acetolactate synthase small subunit OS=Porphyra pu... [more]
ILVH_MYCTU7.855e-3548.73Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_MYCBO7.855e-3548.73Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_ARCFU6.649e-3451.30Probable acetolactate synthase small subunit OS=Ar... [more]
ILVH_AQUAE4.765e-3249.36Acetolactate synthase small subunit OS=Aquifex aeo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F08-K16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070084 ID=CX070084; Name=CX070084; organism=Citrus sinensis; type=EST; length=790bp
GTTGCAATCACCATCAACCTGTTTCCTAAAACCCTGCTCCGACTCGCTTC
CTAATCTTGGGTTCTCAATATCTGTAAGTTTTTCGCCGTCAGTTTCCTCT
TCGCTCTCAAAATCGAACAAAATATTTCTTCACTCTGAGCCCAAGAAACT
CGCTGTCTCTGCAAGAAGTGCCGATGAGAATATCACTGAGGGCACTTTCA
CTTCCCGTTCTACTAACCGCACCAATGTGCGACGGCACACAATTTCCGTG
TTCGTCGGGGATGAAAGTGGAATGATCAACCGGATTGCTGGGGTCTTTGC
AAGGAGGGGATATAACATTGAGTCCCTCGCTGTCGGTCTGAACAAGGACA
AGGCACTCTTCACCATAGTTGTTTATGGAACTGATAAGGTGCTGCAGCAA
GTTATGGAGCAGCTTCAGAAACTTGTTAATGTTTTGAAGGTTGAAGATCT
CTCAAATGAACCCCAGGTTGAACGTGAATTAATGCTCATAAAAGTGAATG
CAGATCCAAAGTTCCGTGCTGAGATCAGGTGGTTGGTGGACATATTTAGA
GCGAAAATTGTGGATATCTCAGAATACTCTCTGACAATTGAGGTAACTGG
AGATCCGGGGAAGATGGTTGCTGTTCAAAGAAACTTAAGCAAGTTTGGGA
TCAGAGAAATTGCGAGAACTGGAAAGATTGCTTTGAGAAGGGAAAAGTTG
GGTGCTTCTGCTCCATTTTGGCGATTTTCAGCAGCTTCATATCCAGATCT
TAATGAAACGCCTACTATTGACGGCCTCGTTGGGGCAGGA
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