CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus GN=rplM PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.203e-28 Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W V DA G+ LGRLAS++A +++GK KP Y P+ D GD IV+NA+ I VTG+KL+ K YYWH+ Y G LKERTLK +E P E IR AV RMLP+N +++ G EHP + +P Sbjct: 14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQAQKPQP 139
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.352e-26 Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+G+ LGRLA++++ +++GK+KP Y P+ D GD +V+NA + VTGRK + KVY WHTGY G L+ER+ ++ + + P E +R+AV M+P+ RI+ G EHP + EPY Sbjct: 14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKVYRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHAGQTPEPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THESQ (50S ribosomal protein L13 OS=Thermotoga sp. (strain RQ2) GN=rplM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KVYYWH+GY G LK T ++ +E+ P I AV RMLP+N +++ EHP + EP Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEP1 (50S ribosomal protein L13 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KVYYWH+GY G LK T ++ +E+ P I AV RMLP+N +++ EHP + EP Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEMA (50S ribosomal protein L13 OS=Thermotoga maritima GN=rplM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KVYYWH+GY G LK T ++ +E+ P I AV RMLP+N +++ EHP + EP Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_KOCRD (50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26 Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA VLGRLASQ AT+++GK KPT+AP+ D GD I++NA+ + +TG KL+ K Y H+GY G LK + E +E++PT A+ KA+ MLP+N +++ G+EHP + +PY Sbjct: 14 QWHVIDATDVVLGRLASQTATLLRGKHKPTFAPHVDTGDFVIIINAEKVALTGSKLQKKRAYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQAQQPKPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MESSB (50S ribosomal protein L13 OS=Mesorhizobium sp. (strain BNC1) GN=rplM PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26 Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLA+ VA ++GK KPT+ P+ DDGD I++NA + TG+K ++K YYWHTGY G +KERT ++ +E R P + KAV RM+PR R++ GSEHP Sbjct: 14 KWVLIDAEGLVVGRLATIVANRLRGKHKPTFTPHVDDGDNVIIINADKVVFTGKKYQDKTYYWHTGYAGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQMKNLRVYAGSEHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26 Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK + K+YY H+GY G LKE K + + P +R AV RMLP+N RI+ G HP + +PY Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIYYRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BARBK (50S ribosomal protein L13 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplM PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.145e-25 Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+ VLGRLA+ VA ++GK KPT+ P+ DDGD IV+NA + +TG+K +K YYWHTGYIG +KERT ++ +E R P I KAV RM+PR R++ GS+HP Sbjct: 14 KWILIDAENLVLGRLATLVANRLRGKHKPTFTPHVDDGDNVIVINADKVVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERIIEKAVERMIPRGPLGRRQMRNLRVYAGSQHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESPS (50S ribosomal protein L13 OS=Desulfotalea psychrophila GN=rplM PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.952e-25 Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = -3 Query: 299 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 700 MK LA + I E W V DA+ +VLGRLAS++A+ ++GK KPT++ D+GD +V NA+ I +TG+K +K YY HTGYIG +KE + KE +E+ PT+ I KAV MLP+N +++ G+ HP Sbjct: 1 MKTYLAPVNEIEKE---WYVVDAENKVLGRLASEIASRLRGKHKPTFSSFIDNGDFIVVTNAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRAQLKKLKVYVGAAHP 131 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |