CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070078_ssr149 microsatellite CX070078_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10629 contig Csv1_Contig10629:228..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus GN=rplM PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.203e-28
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA G+ LGRLAS++A +++GK KP Y P+ D GD  IV+NA+ I VTG+KL+ K YYWH+ Y G LKERTLK  +E  P E IR AV RMLP+N          +++ G EHP   +  +P
Sbjct:   14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQAQKPQP 139          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.352e-26
Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+G+ LGRLA++++ +++GK+KP Y P+ D GD  +V+NA  + VTGRK + KVY WHTGY G L+ER+ ++ + + P E +R+AV  M+P+           RI+ G EHP   +  EPY
Sbjct:   14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKVYRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHAGQTPEPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THESQ (50S ribosomal protein L13 OS=Thermotoga sp. (strain RQ2) GN=rplM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N          +++   EHP   +  EP
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEP1 (50S ribosomal protein L13 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N          +++   EHP   +  EP
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEMA (50S ribosomal protein L13 OS=Thermotoga maritima GN=rplM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N          +++   EHP   +  EP
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_KOCRD (50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA   VLGRLASQ AT+++GK KPT+AP+ D GD  I++NA+ + +TG KL+ K  Y H+GY G LK  +  E +E++PT A+ KA+  MLP+N          +++ G+EHP   +  +PY
Sbjct:   14 QWHVIDATDVVLGRLASQTATLLRGKHKPTFAPHVDTGDFVIIINAEKVALTGSKLQKKRAYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQAQQPKPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MESSB (50S ribosomal protein L13 OS=Mesorhizobium sp. (strain BNC1) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLA+ VA  ++GK KPT+ P+ DDGD  I++NA  +  TG+K ++K YYWHTGY G +KERT ++ +E R P   + KAV RM+PR           R++ GSEHP
Sbjct:   14 KWVLIDAEGLVVGRLATIVANRLRGKHKPTFTPHVDDGDNVIIINADKVVFTGKKYQDKTYYWHTGYAGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQMKNLRVYAGSEHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK + K+YY H+GY G LKE   K  + + P   +R AV RMLP+N          RI+ G  HP   +  +PY
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIYYRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BARBK (50S ribosomal protein L13 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.145e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+  VLGRLA+ VA  ++GK KPT+ P+ DDGD  IV+NA  + +TG+K  +K YYWHTGYIG +KERT ++ +E R P   I KAV RM+PR           R++ GS+HP
Sbjct:   14 KWILIDAENLVLGRLATLVANRLRGKHKPTFTPHVDDGDNVIVINADKVVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERIIEKAVERMIPRGPLGRRQMRNLRVYAGSQHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESPS (50S ribosomal protein L13 OS=Desulfotalea psychrophila GN=rplM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.952e-25
Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = -3
Query:  299 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 700
            MK  LA +  I  E   W V DA+ +VLGRLAS++A+ ++GK KPT++   D+GD  +V NA+ I +TG+K  +K YY HTGYIG +KE + KE +E+ PT+ I KAV  MLP+N          +++ G+ HP
Sbjct:    1 MKTYLAPVNEIEKE---WYVVDAENKVLGRLASEIASRLRGKHKPTFSSFIDNGDFIVVTNAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRAQLKKLKVYVGAAHP 131          
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_AQUAE4.203e-2849.2150S ribosomal protein L13 OS=Aquifex aeolicus GN=r... [more]
RL13_RUBXD1.352e-2643.3150S ribosomal protein L13 OS=Rubrobacter xylanophi... [more]
RL13_THESQ3.934e-2644.4450S ribosomal protein L13 OS=Thermotoga sp. (strai... [more]
RL13_THEP13.934e-2644.4450S ribosomal protein L13 OS=Thermotoga petrophila... [more]
RL13_THEMA3.934e-2644.4450S ribosomal protein L13 OS=Thermotoga maritima G... [more]
RL13_KOCRD6.710e-2644.0950S ribosomal protein L13 OS=Kocuria rhizophila (s... [more]
RL13_MESSB8.763e-2647.0650S ribosomal protein L13 OS=Mesorhizobium sp. (st... [more]
RL13_CHLAD8.763e-2646.0350S ribosomal protein L13 OS=Chloroflexus aggregan... [more]
RL13_BARBK1.145e-2548.7450S ribosomal protein L13 OS=Bartonella bacillifor... [more]
RL13_DESPS1.952e-2544.7850S ribosomal protein L13 OS=Desulfotalea psychrop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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