CX070077

Overview
NameCX070077
Unique NameCX070077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070077_ssr639 microsatellite CX070077_ssr639:639..650. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10629 contig Csv1_Contig10629:229..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus GN=rplM PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.231e-28
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            +W V DA G+ LGRLAS++A +++GK KP Y P+ D GD  IV+NA+ I VTG+KL+ K YYWH+ Y G LKERTLK  +E  P E IR AV RMLP+N           ++ G EHP   +  +P
Sbjct:   14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQAQKPQP 139          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.361e-26
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+G+ LGRLA++++ +++GK+KP Y P+ D GD  +V+NA  + VTGRK + KVY WHTGY G L+ER+ ++ + + P E +R+AV  M+P+            I+ G EHP   +  EPY
Sbjct:   14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKVYRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHAGQTPEPY 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THESQ (50S ribosomal protein L13 OS=Thermotoga sp. (strain RQ2) GN=rplM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N           ++   EHP   +  EP
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THEP1 (50S ribosomal protein L13 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N           ++   EHP   +  EP
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THEMA (50S ribosomal protein L13 OS=Thermotoga maritima GN=rplM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N           ++   EHP   +  EP
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_KOCRD (50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA   VLGRLASQ AT+++GK KPT+AP+ D GD  I++NA+ + +TG KL+ K  Y H+GY G LK  +  E +E++PT A+ KA+  MLP+N           ++ G+EHP   +  +PY
Sbjct:   14 QWHVIDATDVVLGRLASQTATLLRGKHKPTFAPHVDTGDFVIIINAEKVALTGSKLQKKRAYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQAQQPKPY 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MESSB (50S ribosomal protein L13 OS=Mesorhizobium sp. (strain BNC1) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLA+ VA  ++GK KPT+ P+ DDGD  I++NA  +  TG+K ++K YYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GSEHP
Sbjct:   14 KWVLIDAEGLVVGRLATIVANRLRGKHKPTFTPHVDDGDNVIIINADKVVFTGKKYQDKTYYWHTGYAGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQMKNLRVYAGSEHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK + K+YY H+GY G LKE   K  + + P   +R AV RMLP+N           I+ G  HP   +  +PY
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIYYRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BARBK (50S ribosomal protein L13 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.152e-25
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+  VLGRLA+ VA  ++GK KPT+ P+ DDGD  IV+NA  + +TG+K  +K YYWHTGYIG +KERT ++ +E R P   I KAV RM+PR            ++ GS+HP
Sbjct:   14 KWILIDAENLVLGRLATLVANRLRGKHKPTFTPHVDDGDNVIVINADKVVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERIIEKAVERMIPRGPLGRRQMRNLRVYAGSQHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_DESPS (50S ribosomal protein L13 OS=Desulfotalea psychrophila GN=rplM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   99 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            MK  LA +  I  E   W V DA+ +VLGRLAS++A+ ++GK KPT++   D+GD  +V NA+ I +TG+K  +K YY HTGYIG +KE + KE +E+ PT+ I KAV  MLP+N           ++ G+ HP
Sbjct:    1 MKTYLAPVNEIEKE---WYVVDAENKVLGRLASEIASRLRGKHKPTFSSFIDNGDFIVVTNAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRAQLKKLKVYVGAAHP 131          
The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_AQUAE4.231e-2849.2150S ribosomal protein L13 OS=Aquifex aeolicus GN=r... [more]
RL13_RUBXD1.361e-2642.5250S ribosomal protein L13 OS=Rubrobacter xylanophi... [more]
RL13_THESQ3.960e-2644.4450S ribosomal protein L13 OS=Thermotoga sp. (strai... [more]
RL13_THEP13.960e-2644.4450S ribosomal protein L13 OS=Thermotoga petrophila... [more]
RL13_THEMA3.960e-2644.4450S ribosomal protein L13 OS=Thermotoga maritima G... [more]
RL13_KOCRD6.755e-2644.0950S ribosomal protein L13 OS=Kocuria rhizophila (s... [more]
RL13_MESSB8.822e-2646.2250S ribosomal protein L13 OS=Mesorhizobium sp. (st... [more]
RL13_CHLAD8.822e-2645.2450S ribosomal protein L13 OS=Chloroflexus aggregan... [more]
RL13_BARBK1.152e-2547.9050S ribosomal protein L13 OS=Bartonella bacillifor... [more]
RL13_DESPS1.965e-2544.7850S ribosomal protein L13 OS=Desulfotalea psychrop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bp
CCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTATAACAG
AGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGCAACAT
GAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCTACGAT
GGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCATCTCAG
GTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCTAATCG
TGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATGTGTTA
CTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGTATATA
GGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGACCCTAC
AGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAAATTAC
GTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGCACCCT
TTTGGCGACCGGCCCCTTGAACCATACGTGATGCCTCCTCGACGTGTTAG
AGAACTGCGACCTCGTGTTAGAAGAGCCATGATTAGAGAACAGAAAAAGG
CTGAGATGCAGCAGAGTAACAAGGATATGAGGAAAAACAGAAAGAAAGAA
GTTGAAGCAGAAGTGACTGCCTGAAGATCTGTTGGGGCTCTATTTGCTTT
GATAGGGAATACTCGTTTTCTGTATGTAACCCAAACAATCCGGGCATTGT
CTGTTACATGTTGGAATGGCAGTCTAGCATATTCTTTGGTTTTGAAA
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