CX070077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus GN=rplM PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.231e-28 Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524 +W V DA G+ LGRLAS++A +++GK KP Y P+ D GD IV+NA+ I VTG+KL+ K YYWH+ Y G LKERTLK +E P E IR AV RMLP+N ++ G EHP + +P Sbjct: 14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQAQKPQP 139
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.361e-26 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527 +W V DA+G+ LGRLA++++ +++GK+KP Y P+ D GD +V+NA + VTGRK + KVY WHTGY G L+ER+ ++ + + P E +R+AV M+P+ I+ G EHP + EPY Sbjct: 14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKVYRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHAGQTPEPY 140
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THESQ (50S ribosomal protein L13 OS=Thermotoga sp. (strain RQ2) GN=rplM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524 +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KVYYWH+GY G LK T ++ +E+ P I AV RMLP+N ++ EHP + EP Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THEP1 (50S ribosomal protein L13 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524 +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KVYYWH+GY G LK T ++ +E+ P I AV RMLP+N ++ EHP + EP Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THEMA (50S ribosomal protein L13 OS=Thermotoga maritima GN=rplM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524 +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KVYYWH+GY G LK T ++ +E+ P I AV RMLP+N ++ EHP + EP Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKPEP 146
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_KOCRD (50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26 Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527 +W V DA VLGRLASQ AT+++GK KPT+AP+ D GD I++NA+ + +TG KL+ K Y H+GY G LK + E +E++PT A+ KA+ MLP+N ++ G+EHP + +PY Sbjct: 14 QWHVIDATDVVLGRLASQTATLLRGKHKPTFAPHVDTGDFVIIINAEKVALTGSKLQKKRAYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQAQQPKPY 140
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MESSB (50S ribosomal protein L13 OS=Mesorhizobium sp. (strain BNC1) GN=rplM PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26 Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+G V+GRLA+ VA ++GK KPT+ P+ DDGD I++NA + TG+K ++K YYWHTGY G +KERT ++ +E R P + KAV RM+PR ++ GSEHP Sbjct: 14 KWVLIDAEGLVVGRLATIVANRLRGKHKPTFTPHVDDGDNVIIINADKVVFTGKKYQDKTYYWHTGYAGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQMKNLRVYAGSEHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26 Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527 W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK + K+YY H+GY G LKE K + + P +R AV RMLP+N I+ G HP + +PY Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIYYRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BARBK (50S ribosomal protein L13 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplM PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.152e-25 Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+ VLGRLA+ VA ++GK KPT+ P+ DDGD IV+NA + +TG+K +K YYWHTGYIG +KERT ++ +E R P I KAV RM+PR ++ GS+HP Sbjct: 14 KWILIDAENLVLGRLATLVANRLRGKHKPTFTPHVDDGDNVIVINADKVVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERIIEKAVERMIPRGPLGRRQMRNLRVYAGSQHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_DESPS (50S ribosomal protein L13 OS=Desulfotalea psychrophila GN=rplM PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25 Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 3 Query: 99 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 MK LA + I E W V DA+ +VLGRLAS++A+ ++GK KPT++ D+GD +V NA+ I +TG+K +K YY HTGYIG +KE + KE +E+ PT+ I KAV MLP+N ++ G+ HP Sbjct: 1 MKTYLAPVNEIEKE---WYVVDAENKVLGRLASEIASRLRGKHKPTFSSFIDNGDFIVVTNAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRAQLKKLKVYVGAAHP 131 The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bpback to top |