CX070074
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27 Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = -3 Query: 210 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA 509 K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q A Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27 Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = -3 Query: 222 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 509 K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.291e-26 Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = -3 Query: 228 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPF 497 +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+RDA+DPL TTD+ R LGL+VCRG++VM+V PT+G + I NP+ Sbjct: 8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB3C_ARATH (ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.202e-24 Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = -2 Query: 520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729 Q+YYI + RELSRL+GVCKAP+IQ FSETISG+TTIRS QE RFR NM+L D YSRPKF+ AGAMEWL Sbjct: 1105 QRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWL 1174
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe GN=lsm7 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.176e-22 Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = -3 Query: 216 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPD 497 RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR+ +D K T R+LGL+V RGT ++L++P DG++EI NPF+Q + Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB6C_ARATH (ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18 Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = -2 Query: 520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729 +QYYI++ REL+RL G+ ++PV+ FSET+SG TTIRS DQE RFR M+L D YSR KFH GAMEWL Sbjct: 1055 RQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWL 1124
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB7C_ARATH (ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = -2 Query: 520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729 +QYYI++ REL+RL G+ ++P++Q FSET+SG TTIRS DQE RFR M+L D YSR +FH AMEWL Sbjct: 1077 RQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWL 1146
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_YEAST (U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae GN=LSM7 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = -3 Query: 246 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT---TDQTRQLGLIVCRGTAVMLVSPTDGTD 497 ++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD T + R+LGL V RGT ++ +S +G+D Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSD 109
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB9C_ARATH (ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16 Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = -2 Query: 520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729 Q+YY + RELSR+ GV +AP++ F+E+++G+TTIR+ DQ RF +N+ LID +SRP FH+A AMEWL Sbjct: 1075 QRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWL 1144
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB15C_ARATH (Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16 Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = -2 Query: 520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729 Q+YY + RELSR+ GV +AP++ F+E+++G+TTIR+ DQ RF +N+ LID +SRP FH+A AMEWL Sbjct: 622 QRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWL 691 The following BLAST results are available for this feature:
BLAST of CX070074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070074 ID=CX070074; Name=CX070074; organism=Citrus sinensis; type=EST; length=793bpback to top |