CX070065

Overview
NameCX070065
Unique NameCX070065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4327 contig Csv1_Contig4327:213..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX070065 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.807e-23
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = -3 
Query:  155 LDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 340
            +DCGG C  RC L SRP LCNRACGTCC RC CVPPGT+GN E C  CY  +TTHGN+ KCP
Sbjct:   44 IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104
[Close]
BLAST of CX070065 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 47/81 (58.02%), Postives = 51/81 (62.96%), Query Frame = -3 
Query:  155 HAGVGQLVVRGVTRRLMQDLDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 397
            HA     V  GV +     +DCGG CK RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G R KCP
Sbjct:   25 HAAEDSQVGEGVVK-----IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99
[Close]
BLAST of CX070065 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21
Identity = 46/81 (56.79%), Postives = 51/81 (62.96%), Query Frame = -3 
Query:  155 HAGVGQLVVRGVTRRLMQDLDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 397
            HA  G  V  GV +     +DCGG CK RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG R KCP
Sbjct:   25 HAADGAKVGEGVVK-----IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99
[Close]
BLAST of CX070065 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = -3 
Query:  155 LDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 340
            +DCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R KCP
Sbjct:   38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98
The following BLAST results are available for this feature:
BLAST of CX070065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU3.807e-2369.35Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA3_ARATH2.089e-2158.02Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH6.077e-2156.79Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA1_ARATH6.719e-2062.90Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E10-I20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070065 ID=CX070065; Name=CX070065; organism=Citrus sinensis; type=EST; length=513bp
TTTTTTTTCCACAAATTATAATCATTATTAGACAGCCCATAGCCCACTTT
TAAACAGTCGCACTTAGGTTACAAAAGTTCCAAGAGAAAAGAGAAAAGAT
ATGTACAACCCAGATGGGTTTAGGCCAGTCTGGAGTCAGAAGCCCATGGG
CCTATGGGCACTTAGTCCTGTTTCCGTGGGTAGTCATGTCAGTATAGCAA
CTCCCACAAAGCTCCCTGTTACCCGCGGTGCCAGGTGGCACGCACTTGCA
TCTTACACAACACGTGCCGCATGCTCTGTTACACAAGTTTGGCCTTGAGT
GAAGACTGCACCTCTGTTTGCACAGCCCTCCACAGTCTAGGTCTTGCATA
AGCCTTCTGGTTACACCTCTCACAACAAGCTGGCCAACACCAGCATGCTG
GACTCCATCTCCATCATCTTCTTTCTTCAGAGTAGATGAAACCTCTGCAA
CTGCAACACAGAAGAGCAAAATCCCCAACAGAAGAAGCACGCGTACTGTC
ATCGCTGCTGCCT
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