CX070056

Overview
NameCX070056
Unique NameCX070056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070056_ssr705 microsatellite CX070056_ssr705:705..716. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13133 contig Csv1_Contig13133:56..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.106e-73
Identity = 147/211 (69.67%), Postives = 157/211 (74.41%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEY++GQLKEFEGKKLVSAT                         LCKV+KDVLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL++PNTFGNRIHRMLKLGLSI+E++GDADADMP LED   DAEGSKMEEVD
Sbjct:  489 VLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.575e-71
Identity = 149/212 (70.28%), Postives = 158/212 (74.53%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYA+GQLKEFEGKKLVSAT                         LCKVIKDVLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSLD+PNTFG+RIHRMLKLGLSI ++DA +ADA+MPPLED A DAEGSKMEEVD
Sbjct:  489 VLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDAVEADAEMPPLEDDA-DAEGSKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 7.491e-71
Identity = 148/212 (69.81%), Postives = 156/212 (73.58%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYA+GQLKEFEGKKLVSAT                         LCKVIKDVLG              SPCCLVTGEYGWTANMERIMKAQALRD+SM GYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSLD+PNTFG+RIHRMLKLGLSI ++D  +ADADMPPLED A DAEGSKMEEVD
Sbjct:  489 VLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDVVEADADMPPLEDDA-DAEGSKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 148/212 (69.81%), Postives = 153/212 (72.17%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYAVGQLKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IMEELRKRADADKNDKSVKD          LTSGFSLDDPNTFG+RIHRMLKLGLSI+ED   +AD DMPPLE   DDA  SKMEEVD
Sbjct:  491 VLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAEADTDMPPLE---DDAGESKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 148/212 (69.81%), Postives = 153/212 (72.17%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYAVGQLKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IMEELRKRADADKNDKSVKD          LTSGFSLDDPNTFG+RIHRMLKLGLSI+ED   +AD DMPPLE   DDA  SKMEEVD
Sbjct:  491 VLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAEADTDMPPLE---DDAGESKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.845e-69
Identity = 147/212 (69.34%), Postives = 154/212 (72.64%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYAVGQLKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL+DPNTFG RIHRMLKLGLSI+ED + +ADADMPPLE   DDA  SKMEEVD
Sbjct:  491 VLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAEADADMPPLE---DDAGESKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.845e-69
Identity = 147/212 (69.34%), Postives = 154/212 (72.64%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYAVGQLKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL+DPNTFG RIHRMLKLGLSI+ED + +ADADMPPLE   DDA  SKMEEVD
Sbjct:  491 VLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAEADADMPPLE---DDAGESKMEEVD 699          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.981e-64
Identity = 136/212 (64.15%), Postives = 148/212 (69.81%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL-CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+MVDAIDEYAVGQLKE++GKKLVSAT                           CK+IKD+LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLDDPNTFG RIHRMLKLGLSI+E+    DADMP LE+ A   E SKMEEVD
Sbjct:  494 VLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDDDEEEKKKREEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLKLGLSIDEEEAGDDADMPALEEEA--GEESKMEEVD 703          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.513e-63
Identity = 137/214 (64.02%), Postives = 150/214 (70.09%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL--CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+MVDAIDEYAVGQLKE++GKKLVSAT                            CKVIKD+LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+AD+NDKSVKD          LTSGFSLDDPNTF  RIHRMLKLGL+I+ED A D DADMP L++ A  AE SKMEEVD
Sbjct:  504 VLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDEDDEEAKKRREERKKRFEELCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSAYMSSKKTMEINPDNGIMEELRKRAEADRNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLNIDEDAAADEDADMPALDEGA--AEESKMEEVD 715          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 5.749e-63
Identity = 136/213 (63.85%), Postives = 148/213 (69.48%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL-CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAG-DADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYAVGQLKE++GKKLVSAT                           CK IK++LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+GYMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLD+PNTF  RIHRMLKLGLSI+ED   + D DMP LE+  D AE SKMEEVD
Sbjct:  490 VLYMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDETEEEKKKREEKKKSFENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLYETALLTSGFSLDEPNTFAARIHRMLKLGLSIDEDENVEEDGDMPELEE--DAAEESKMEEVD 700          
The following BLAST results are available for this feature:
BLAST of CX070056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
HSP80_SOLLC2.106e-7369.67Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP82_ARATH2.575e-7170.28Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP83_ARATH7.491e-7169.81Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ8.282e-7069.81Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI8.282e-7069.81Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ1.845e-6969.34Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ1.845e-6969.34Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP83_IPONI3.981e-6464.15Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP82_MAIZE1.513e-6364.02Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]
HSP81_ARATH5.749e-6363.85Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14E05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E05-I10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070056 ID=CX070056; Name=CX070056; organism=Citrus sinensis; type=EST; length=836bp
CTTTTTTTTTTGATTCGGAAACAGCATACTTTTTAAGCATTTGCAAAACA
ATAAAACAAAACCTCCACCAAAGAGGGAAAATAAAAATATAAAAGCACTA
CTCCCACAGTACTACCACCACAGAACGCATAACAAAAAGAAACTACCTAG
TTAAAAGAGTTTCATGAAAAAAGACTACTATAGCAGACTATTATAGCTTC
TTAATCAACTTCCTCCATCTTGCTGCCCTCAGCATCGTCAGCAGCATCCT
CCAATGGTGGCATGTCAGCATCAGCATCACCAGCATCCTCCTCGATGCTC
AGCCCGAGTTTCAACATCCTGTGGATTCTGTTGCCGAAAGTGTTAGGGTC
ATCAAGGCTGAAACCAGAAGTGAGGAGAGCAGTCTCAAAGAGCAGAAGGA
CAAGGTCCTTCACAGACTTGTCATTCTTGTCAGCATCAGCCCTCTTCCTG
AGCTCCTCCATGATGGGGTTCTCCGGATTGATCTCCATGGTCTTCTTGCT
GGACATGTAACCAGCCATGCTGTTGTCTCTCAAGGCCTGAGCCTTCATGA
TCCTCTCCATGTTGGCTGTCCATCCATACTCACCAGTCACCAAACAGCAG
GGTGAGTCAACAACACGGTCAGACACCACAACCTTCTCGACCTTGTCACC
CAAAACATCCTTGATCACCTTGCAGAGACCCTCAAATTTCTCCTTCAAGG
TTTCCTTCTTCTTCTTCTCATCTTCACTCTCGTCAAGCTTGAGACCTTCT
TTGGTTGCTGAGACAAGCTTCTTTCCCTCAAACTCCTTGAGCTGACCAAC
AGCGTACTCATCTATGGCATCAACCATGTAGAGCAC
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