CX070033

Overview
NameCX070033
Unique NameCX070033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13340 contig Csv1_Contig13340:159..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.570e-32
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    1 FDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKK 261
            FDD TRE+P GHCLVAGIKK P KVI KDSAKKTAK SRVKAFVKLV+YQHLMPTRYTLDVDLK  V  D LQSKDKK+ A KETKK
Sbjct:   29 FDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKK 115          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.868e-31
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 FDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETK 258
            FDD  R+RP GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+LQSKDKK+ A KE K
Sbjct:   29 FDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAK 114          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.625e-29
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 FDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETK 258
            FDD T +R  GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+L+SKDKK+ A KE K
Sbjct:   29 FDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAK 114          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.828e-28
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 FDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETK 258
            FDD T E+  GHCLVAG+KK P KVI KDSAKKTAK SRVK F K+++YQH+MPTRYTLD+DLK VV+AD++ SKDKK+ A KE K
Sbjct:   29 FDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAK 114          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.507e-24
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 FDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL----KVVVTADSLQSKDKKMIA 243
            FD+ TR+RP GHCLVAGI + P KVI KDSAKK  K SRVKAF+KLV+Y H+MPTRYTLD DL    K VV AD LQ++DKK+ A
Sbjct:   29 FDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA 113          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.904e-18
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 FDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKK 261
            FDD T  RP GH LV G++K P KV  + S KK AK S +K F+K V+Y HLMPTRYTLDVD K  V A++ ++  KK+ A KE KK
Sbjct:   29 FDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK-GVAAEAQENPTKKVEARKECKK 114          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    4 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 261
            D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK
Sbjct:   30 DEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKK 116          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    4 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 261
            D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK
Sbjct:   30 DEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKK 116          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    4 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 261
            D+ T+  P  H +VAGI++ P KV  K  AKK  K ++VK FVKLV+Y HLMPTRY+LDV+  K  VT+++L+   ++  A K  KK
Sbjct:   30 DEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKK 116          
BLAST of CX070033 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    4 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 261
            D  ++  P GH +VAG+++ P KV     AK+ A+ SRVK F+K+V+Y HLMPTRY L++D LK ++TAD+ +   ++  A K  KK
Sbjct:   30 DQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKK 116          
The following BLAST results are available for this feature:
BLAST of CX070033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL27_PEA1.570e-3281.6160S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH3.868e-3176.7460S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH1.625e-2974.4260S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH6.828e-2869.7760S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU3.507e-2467.0660S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST4.904e-1855.1760S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27B_YEAST2.975e-1545.9860S ribosomal protein L27-B OS=Saccharomyces cerev... [more]
RL27A_YEAST8.657e-1545.9860S ribosomal protein L27-A OS=Saccharomyces cerev... [more]
RL27_CANAL1.929e-1448.2860S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27A_SCHPO3.290e-1444.8360S ribosomal protein L27-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14D04-G8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070033 ID=CX070033; Name=CX070033; organism=Citrus sinensis; type=EST; length=262bp
TTCGACGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGG
GATAAAGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGA
CAGCGAAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAG
CACCTGATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGTAGTCGT
GACGGCTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGG
AGACCAAGAAAC
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