CX070021

Overview
NameCX070021
Unique NameCX070021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070021_ssr319 microsatellite CX070021_ssr319:319..330. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9091 contig Csv1_Contig9091:375..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX070021 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = -3 
Query:  420 DIVKSESDVKYPFLKQASQMLGNVAAAPAFASEFPTKDAALRLNSLAHPSSSVHVTAGMIRIRNITLSG-SGLDWSVGKNGDMNIVFSFDLSQ 695
            D    +S  KYPFLK+ S MLG +    +FAS+F TKD A+RL++ A  S SVHVTAGM+RI N+TL+  SG+ WS  KNG++N+V SF + Q
Sbjct:  433 DFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKD-AMRLHA-AQSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQ 523
The following BLAST results are available for this feature:
BLAST of CX070021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH4.624e-1752.69NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C09-E18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070021 ID=CX070021; Name=CX070021; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTTTTTTTTTTTTAAAGCGAAACCAGAATTTCAAATAATATTATCG
TATTCAACTACAAGTGGGGACATATTTAAAAGTTACAATGGTATAAAGTA
TATAAGACGCCAACTTAATTTGACAGTCAAAAAGTTACATATAACAACAT
ATCTGCAACGAGGGGGGGTCCAAGTCAATAATCTATAAAGAAATATCAAT
ATCAACTAACCCTATCAATTTAACCAGCAAATAAAGTTTTGGATGCAGTA
ATCCTGTTTACTTGGCAGAAACACAGGCACCAATCTTAAAACCCACTGAA
AGAATTATGATCCAAAGGAACAACAACAACCACAAGCTCCGGAACACCAC
CGACCCTGTCTTACCAGAGAAAATGTTACCCGCCGGTTCAAAACTGGTAG
GACTAGGACTGATGACATTTTGTGACAGGTCAAAAGAAAAGACAATATTC
ATATCCCCATTCTTGCCAACCGACCAGTCCAATCCACTTCCACTTAAAGT
GATATTTCTGATTCTGATCATACCGGCAGTAACATGAACTGAACTGGACG
GATGAGCCAATGAATTGAGTCGAAGAGCTGCATCCTTTGTAGGGAATTCC
GAGGCAAATGCAGGAGCAGCAGCAACGTTGCCCAACATTTGACTGGCCTG
TTTGAGGAAGGGATACTTGACATCTGATTCGGATTTGACAATATCTGGCT
TTT
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