CX070020

Overview
NameCX070020
Unique NameCX070020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9908 contig Csv1_Contig9908:858..1725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX070020 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.550e-34
Identity = 110/307 (35.83%), Postives = 157/307 (51.14%), Query Frame = 3 
Query:   42 NFYHGESSNHVEHSR-------------------------DLSPDNQKPMIGVGATQHNSELMDAR---PVKDEYI----DSSNGVNAGGV---------NYFLNEPYLDATDNPQFSDGLYLEANDLSSTAEADSQGFDMVEEYLNFFDANDDNSEYLTFDASEILGSGDNNSAQAPLTTEQVTEVTDQMSMAGQHQAEVHGNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFASEFPTKDAALRLNSLAHPSSSVHVTAGMIRIRNITLSG-SGLDWSVGKNGDMNIVFSFDLSQ 836
            N+ HGESSN+VE                            +   +++KP+I  G+ Q  S   + +    V+DE +     S+N V              NY  +EP++D  +N   +DGLYLE NDLS  A+ D   F   E+YL+FFD      E LTFD S ++G  D    Q  L  +   +  ++    G+   E   +   S+S+Q  D    +S  KYPFLK+ S MLG +    +FAS+F TKD A+RL++ A  S SVHVTAGM+RI N+TL+  SG+ WS  KNG++N+V SF + Q
Sbjct:  228 NYCHGESSNNVESGNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQDENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSC-AQQDDFNF---EDYLSFFD-----DEGLTFDDSLLMGPEDFLPNQEALDQKPAPKELEKEVAGGKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKD-AMRLHA-AQSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQ 523
The following BLAST results are available for this feature:
BLAST of CX070020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH1.550e-3435.83NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C09-E18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070020 ID=CX070020; Name=CX070020; organism=Citrus sinensis; type=EST; length=868bp
CTGATGTTGCAAATCAATCTGAAAATGCTCTGCGTCATTTGAACTTCTAT
CATGGAGAGTCAAGCAACCATGTTGAGCATTCAAGGGACTTGAGTCCAGA
TAATCAGAAGCCCATGATAGGTGTGGGTGCCACACAGCATAATTCAGAGC
TGATGGATGCAAGACCGGTAAAAGATGAATATATTGATTCTAGCAATGGT
GTCAATGCTGGTGGCGTTAATTATTTTCTCAATGAGCCTTACTTGGATGC
TACTGATAATCCTCAATTCAGTGATGGATTATACCTAGAAGCTAACGACC
TATCAAGCACTGCTGAAGCTGATTCTCAAGGGTTTGACATGGTTGAAGAG
TACCTTAATTTCTTTGATGCTAATGATGACAACTCAGAGTACCTGACTTT
TGATGCTTCTGAAATTCTGGGGAGCGGAGACAACAATTCTGCCCAAGCAC
CTCTCACAACAGAGCAGGTGACTGAAGTAACTGATCAAATGTCCATGGCT
GGCCAGCATCAAGCTGAAGTACATGGTAATGATGTTGCATCCACTTCAGA
GCAAAAGCCAGATATTGTCAAATCCGAATCAGATGTCAAGTATCCCTTCC
TCAAACAGGCCAGTCAAATGTTGGGCAACGTTGCTGCTGCTCCTGCATTT
GCCTCGGAATTCCCTACAAAGGATGCAGCTCTTCGACTCAATTCATTGGC
TCATCCGTCCAGTTCAGTTCATGTTACTGCCGGTATGATCAGAATCAGAA
ATATCACTTTAAGTGGAAGTGGATTGGACTGGTCGGTTGGCAAGAATGGG
GATATGAATATTGTCTTTTCTTTTGACCTGTCACAAAATGTCATCAGTCC
TAGTCCTACCAGTTTTGA
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