CX070018

Overview
NameCX070018
Unique NameCX070018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10427 contig Csv1_Contig10427:1402..1908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.158e-46
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = -1
Query:  190 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 504
            RI+NY+NELCDR+PSPMG+SAVDC +LSS+P VSFTIGGKIFDL P++YILKVGEG  AQCISGF+A D+ PPRGPLWILGDVFMG YHTVFD+  +RVG AEAA
Sbjct:  409 RIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.040e-45
Identity = 81/104 (77.88%), Postives = 96/104 (92.31%), Query Frame = -1
Query:  190 ILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 501
            I+NYV++LC+RLPSPMGESAVDCS LSS+P ++FT+GGK F+L+P+QY+LKVGEG  AQCISGF+A+DVAPP GPLWILGDVFMG YHTVFDY N+RVGFAEAA
Sbjct:  370 IINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 8.572e-44
Identity = 79/104 (75.96%), Postives = 93/104 (89.42%), Query Frame = -1
Query:  190 ILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 501
            ILNY+N+LCD+LPSPMGES+VDC  L+S+P +SFTIGGK F L P++YILKVGEG AAQCISGF+A+D+ PPRGPLWILGDVFMG YHTVFDY  MRVGFA++A
Sbjct:  406 ILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.120e-43
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = -1
Query:  190 ILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 501
            IL+YVN+LC+RLPSPMGESAVDC  L S+P + FTIGGK F L P++YILKVGEG AAQCISGF+A+D+ PPRGPLWILGDVFMGPYHTVFDY  +R+GFA+AA
Sbjct:  405 ILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.569e-35
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = -1
Query:  190 ILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 501
            ILNY N+LC+RLPSP GES V C ++S +P ++FTI  K F LTP+QYI+K+ +G    CISGF A D+ PPRGPLWILGDVFMG YHTVFD+   R+GFA++A
Sbjct:  393 ILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.824e-25
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  193 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 468
            +P   GE  + C ++SSLP V   +GGK ++L PD+YILKV +G    C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD  N RVGFA A
Sbjct:  316 VPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.912e-25
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  193 PSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 465
            P   GE  V+C  + SLP++SFT+GG+++ LT +QYILKV +     C+SGF  LD+  P GPLWILGDVFMG Y+TVFD    RVGFA+A
Sbjct:  305 PLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  190 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 468
            +P   GE  + C ++SSLPI++F +GG+ ++L P++YILKV +     C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVGFA+AA
Sbjct:  313 VPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = -1
Query:  190 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 468
            +P   GE  + C ++S+LP ++  +GGK + L+P+ Y LKV +     C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD  N RVGFAEAA
Sbjct:  318 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of CX070018 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.853e-24
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = -1
Query:  196 PSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 465
            P   G+  + C ++SSLP+V+  +GGK + LT +QY+ KV       C+SGFS LDV PP GPLWILGDVF+GPY+TVFD  N  VGFA+
Sbjct:  307 PLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
The following BLAST results are available for this feature:
BLAST of CX070018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ASPR_CUCPE9.158e-4678.10Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
CYPR1_CYNCA2.040e-4577.88Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR1_ORYSJ8.572e-4475.96Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU1.120e-4375.96Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPRX_ORYSJ5.569e-3562.50Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_MOUSE6.824e-2555.43Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CHIHA8.912e-2556.04Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_RAT3.387e-2452.69Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN7.544e-2451.61Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_CHICK9.853e-2454.44Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C08-E16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070018 ID=CX070018; Name=CX070018; organism=Citrus sinensis; type=EST; length=507bp
GCCCCCCCTTTAATAGTCCAGGCACGGATTTATAAACAAAGTCCAACGTC
TTGGGCTTCTCAACAGCTGTCATACATCAGAGCATTTACATAGAACAGTT
ATTTAAGGTTTAGTTTCAACATCTTAAAGAAACAACTGAAATTCCACGAG
GTACGGTTCACTGAGCATAATTTAAAACAAACTTATTTACGCGGCTTCAG
CAAATCCCACTCTCATGTTGCTGTAGTCAAAGACTGTGTGGTAGGGACCC
ATAAAAACATCCCCCAAGATCCATAGAGGTCCACGTGGTGGGGCAACATC
TAGAGCTGAGAATCCACTTATACATTGAGCTGCATCTCCCTCGCCCACTT
TGAGGATGTACTGATCAGGAGTAAGGTCAAATATCTTTCCACCAATCGTA
AAGGAAACAATAGGCAAGGAAGACAATCTGCTACAGTCAACAGCCGATTC
TCCCATAGGACTAGGCAACCGATCACAGAGCTCATTGACATAGTTAAGAA
TGCGCCT
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