CX070016

Overview
NameCX070016
Unique NameCX070016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11200 contig Csv1_Contig11200:57..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.325e-78
Identity = 151/174 (86.78%), Postives = 158/174 (90.80%), Query Frame = -3
Query:  352 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTTGNA 873
            TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            SRQSFLNT+KWIDEVRTERGSDVI+VLVGNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK LFRKIAAALPGMETLSSTKQE+MVDVNL+S+  NA
Sbjct:   23 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSNANA 196          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 7.757e-66
Identity = 124/167 (74.25%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 250.751 bits (639), Expect = 7.757e-66
Identity = 124/167 (74.25%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 7.757e-66
Identity = 124/167 (74.25%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 1.013e-65
Identity = 123/167 (73.65%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIR            +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.120e-64
Identity = 130/176 (73.86%), Postives = 147/176 (83.52%), Query Frame = -3
Query:  352 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-STKQEEMVDVNLRSTTGNA 873
            TSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +RQ+FLNTSKWI++V  ERG S+VIIVLVGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK LFRKIAAALPG+++ S +TK ++MVDVNL++T+ ++
Sbjct:   23 TSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLATKSDDMVDVNLKTTSNSS 198          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 119/167 (71.26%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +  SF  TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 119/167 (71.26%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +  SF  TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 119/167 (71.26%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  373 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 873
            TS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR            +  SF  TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L
Sbjct:   27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKL 193          
BLAST of CX070016 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.513e-61
Identity = 118/166 (71.08%), Postives = 134/166 (80.72%), Query Frame = -3
Query:  376 TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXSRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVN 873
            TSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIR            +  SF  T+KW+D+VR ERG DVIIVLVGNKTDL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K LFRKIA ALPG+    + +Q  +V +N
Sbjct:   25 TSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPNIVIMN 190          
The following BLAST results are available for this feature:
BLAST of CX070016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
RBH1B_ARATH2.325e-7886.78Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RAB6A_PONAB7.757e-6674.25Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_MOUSE7.757e-6674.25Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB6A_HUMAN7.757e-6674.25Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
RAB6A_CHICK1.013e-6573.65Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RBH1C_ARATH1.120e-6473.86Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB6B_MOUSE9.482e-6471.26Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN9.482e-6471.26Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN9.482e-6471.26Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RAB6A_CAEEL7.513e-6171.08Ras-related protein Rab-6.1 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C07-E14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070016 ID=CX070016; Name=CX070016; organism=Citrus sinensis; type=EST; length=875bp
TACCGAGGCCCCCCCCAATTTTACAAAATCATTTCCAAGAATCCAAATCT
TATAAATGTATCATTTCTTTGTTTGCAAACCTGAGGACTATGAATTGTAC
CGGGAAAACTCAGTAAATATTACCACACATATAATGCCTTAGGACTAACT
AGCCAACAGCAGTAAAATACTTCCAAACAGCAATGGGGAAAAATATAAAA
GAAGAAAAATACTCAGAGGCTGTGGTAACCTTTACAGATCTGGAGTTTAA
AAAGGTCGAAAGAACCTAATAGCATGAGAGAGACAATAGGCACCAAGACG
TCCAGGATTGCATCAACAAGAGCATCCACTTGACTGAGACTGGGACTGTG
ATGCATTGCCAGTTGTAGACCTCAGATTCACGTCAACCATTTCTTCTTGC
TTTGTTGAAGAAAGTGTTTCCATCCCTGGCAATGCTGCAGCAATTTTCCG
AAACAAAGGCTTTATATTAAAACCAGCTTTAGCACTCGTTTCAATGAACA
TGACGTTGAGTTCCCGAGATTTGGCTTCTCCTTCCTCTATGGAGACTTGC
CTTTTTTCCACAAGGTCAGTTTTGTTCCCAACAAGGACAATGATGACATC
ACTACCCCTCTCGGTTCGAACCTCATCAATCCATTTTGAAGTGTTCAAGA
AAGATTGCCGGCTTGCAACATCATATACAACAACAGCAACAGAAGAATCC
CTGATGTAGCTTGGAATGAGACTTCTAAATCTTTCCTGTCCAGCTGTATC
CCACAGCTGCAGACGAACAGTTCGATCTTCAAGGTACATAGTTTTTGAAA
GGAAATCAATACCAATTGTAGCCTGATAGGTGTTATCGAATTTATCATAC
ATGAAGCGAGTGATGATACTTGTTT
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