CX070015

Overview
NameCX070015
Unique NameCX070015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070015_ssr447 microsatellite CX070015_ssr447:447..458. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX070015 vs. ExPASy Swiss-Prot
Match: NOC2L_ARATH (Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.229e-30
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = 1
Query:  259 NKARNLDHEICDDEMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPD----MEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLP 795
            N  + +D      E +   +  + V   K  A+EH+E+L+RLQEKDP+FF++++                                 G D    ME  ++   +  IT  MVD+W  SI +  +LG VRS+++A+R ACHYGDD G++ S KF +MSS VFNKIM++VLSEMDGILRKLL+ P
Sbjct:   40 NNVQEIDAHDIVMEQKSDKKRGKKVKSKKAEAEEHEEELKRLQEKDPDFFQYMKEHDAELLKFDATEIEDDADVEPDTDLEDTEKE-GDDEATKMEIAKKVHVQKTITASMVDAWSKSIEDEAKLGGVRSILRAYRTACHYGDDTGDDQSTKFSVMSSEVFNKIMIYVLSEMDGILRKLLRFP 221          
BLAST of CX070015 vs. ExPASy Swiss-Prot
Match: NOC2L_ORYSJ (Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.962e-28
Identity = 73/181 (40.33%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  274 LDHEICDDEMEEQDETSRPVSK--SKKVAKEHKEQLQRLQEKDPEFFKFLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPDMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGK 810
            +D  + D+E  E  E+     K  S+K AK H +QL+RLQEKDPEF+K+L+                                    +  EE K     IT +MVDSWC    E+G++G++RS+++AFR ACHYG+++G  S+ KF +MS SV +K+M FVL  MD ILR+LL  PS GGK
Sbjct:    8 VDLPVSDEEEWEDGESEEDEEKVGSRKKAKVHAKQLKRLQEKDPEFYKYLEECDKELLEFDDDDFDDNEGSAEKHS----------SVPKEEPKEIVKPITMQMVDSWCQGA-EDGKIGSIRSILEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKNMDRILRELLDAPSFGGK 177          
The following BLAST results are available for this feature:
BLAST of CX070015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOC2L_ARATH1.229e-3039.34Nucleolar complex protein 2 homolog OS=Arabidopsis... [more]
NOC2L_ORYSJ1.962e-2840.33Nucleolar complex protein 2 homolog OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C06-E12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070015 ID=CX070015; Name=CX070015; organism=Citrus sinensis; type=EST; length=811bp
CATTCGCTCACTTCGCAGCGAAATAGACCCTAAGCCAACTATCAGAAATT
CGCCGCTACCCTCACCGGAATCTCGCCGGCGACGCCAATTCGCCGCTTTC
AGCCACCGAGTTCATGTGGTGCTTAATGTGAAGCTTGTAAAAGGCATCTG
TTAAAGATATTGAACAGGCTGAATAACAGAGCATTCCCATTATTCGTCCA
TTGCTTCGTTTCAATTTAGTCTAGTAGTTCTTCACTAAGAAGCATCATGG
GTGCTAAAAACAAAGCAAGGAATTTAGACCATGAAATATGTGATGATGAA
ATGGAAGAACAAGACGAGACAAGTAGGCCGGTCTCAAAATCAAAGAAAGT
AGCAAAGGAGCACAAGGAGCAATTACAACGGCTCCAGGAAAAGGACCCTG
AATTCTTCAAGTTTCTGCAAGAACATGACAAGGAGCTGCTGGAATTTGAT
GATGATGATATTGATGATGATGTTGAAACTGATATGGAAGATGCAGAAAT
GCAAGAAGATGAGGATGTTGGGCCTGATATGGAGGACGAGGAAGAGAAGC
CATCTAAAAATGTTATAACAACTGAGATGGTTGATTCCTGGTGTAATTCA
ATTAGGGAAAATGGACAATTAGGTGCAGTTCGTTCGCTTATGAAAGCTTT
TAGGATTGCCTGCCACTATGGTGATGATGCCGGAGAGGAGTCCTCTGTGA
AGTTTCATATCATGTCTAGCAGTGTCTTTAATAAAATAATGTTATTTGTA
CTAAGTGAAATGGACGGGATTCTTCGAAAGTTGTTGAAACTCCCCAGTTC
TGGAGGAAAGA
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