CX070014

Overview
NameCX070014
Unique NameCX070014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: NOC2L_ARATH (Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.968e-37
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = -3
Query:  606 SLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQH 869
            SLLRKY+K ALHFWGTG GALPVV+ LFLRDLCIRLGSDC+DDCFKG+YKAY+LNC F+NA KL+HI FL NC +ELLG D+ +AYQH
Sbjct:  286 SLLRKYIKVALHFWGTGSGALPVVSLLFLRDLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQH 373          
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.384e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = -1
Query:  416 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 607
            MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  292 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: NOC2L_ORYSJ (Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.346e-28
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = -3
Query:  606 SLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHF---INAVKLQHIQFLSNCVVELLGVDLPSAYQH 869
            +LLRKYVKA LH W  G GA+P+V+FLFLRDLCI+LGS+CLD   KGIYKAY++NC     I+  KLQHIQFL NCV EL  VD  SAYQH
Sbjct:  236 ALLRKYVKALLHTWSRGRGAMPLVSFLFLRDLCIQLGSECLDTSLKGIYKAYLVNCKLSKSISGSKLQHIQFLGNCVRELYNVDPQSAYQH 326          
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.217e-27
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = -1
Query:  416 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 607
            MEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  288 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -1
Query:  416 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 607
            MEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  285 MEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.972e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -1
Query:  434 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 607
            MEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  291 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CX070014 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = -1
Query:  434 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 607
            MEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  288 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
The following BLAST results are available for this feature:
BLAST of CX070014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NOC2L_ARATH1.968e-3777.27Nucleolar complex protein 2 homolog OS=Arabidopsis... [more]
THI4_CITSI3.384e-29100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
NOC2L_ORYSJ6.346e-2867.03Nucleolar complex protein 2 homolog OS=Oryza sativ... [more]
THI4_ALNGL9.217e-2792.19Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH8.074e-2382.81Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE2.972e-1775.86Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.291e-1672.58Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14C06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C06-E12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070014 ID=CX070014; Name=CX070014; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTTTTTTTTAGCAACAAAAACAGAGTAAGCTCAGATCTTCATCATT
GATCTTAATCACATCAGCACTGTCCCATTGGCTGATGCCTCAAGTTATAA
ACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAA
TACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAAAC
TCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCA
TGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATCATCT
CATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACTACTTTT
TTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTT
ATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGA
TCAGCTCAGGGTGAACACCTCCCACATATGTACCGTCTAATGCATTCGGC
TGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCAT
CATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAA
CTTCCATGCTGATATGCAGATGGAAGGTCCACCCCGAGAAGTTCTACAAC
GCAATTACTAAGAAACTGGATATGCTGTAATTTTACAGCATTTATGAAGT
GACAGTTTAATATGTAGGCTTTGTATATCCCTTTGAAGCAGTCATCCAAA
CAATCAGATCCAAGCCGTATGCACAAGTCTCTTAAAAATAGAAAAGCAAC
AACAGGGAGTGCACCTCCTCCTGTACCCCAAAAATGAAGTGCAGCCTTAA
CATATTTCCTTAGGAGGCTCG
back to top