CX070005

Overview
NameCX070005
Unique NameCX070005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2984 contig Csv1_Contig2984:330..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.905e-27
Identity = 61/102 (59.80%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKADLPGL              LQISG+R +EKEDKNDTWHRVERSSG F RRFRLPEN KMDQ+KASME+G                 +I ISG
Sbjct:   53 ETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKADLPGL              L+ISG+R +EKEDKNDTWHRVERSSG F+RRFRLPENVKMDQ+KA+ME+G                 +I ISG
Sbjct:   52 ETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.420e-26
Identity = 59/102 (57.84%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKAD+PGL              LQISG+R +EKEDKNDTWHRVERSSG F RRFRLPEN K++Q+KASME+G                 AI ISG
Sbjct:   60 ETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.095e-25
Identity = 58/102 (56.86%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKAD+PGL              LQISG+R +EKEDKNDTWHRVERSSG F+RRFRLPEN K++++KASME+G                 AI ISG
Sbjct:   53 ETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.430e-25
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 237
            ETPEAHVFKADLPGL              LQISG+R +EKEDKND WHRVERSSG F RRFRLPEN KMDQ+KA+ME+G
Sbjct:   42 ETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENG 120          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 59/102 (57.84%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKAD+PGL              LQISG+R +EKEDKNDTWHRVERSSG   RRFRLPEN K+DQ+KASME+G                 AI ISG
Sbjct:   52 ETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 59/102 (57.84%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKADLPGL              LQISG+R +EKEDKND WHRVERSSG F RRFRLPEN KMD++KASME+G                 +I ISG
Sbjct:   57 ETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.186e-25
Identity = 58/102 (56.86%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVF+AD+PGL              LQISG+R +EKEDKNDTWHRVERSSG F RRFRLPEN K++Q+KASME+G                 AI ISG
Sbjct:   52 ETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.435e-25
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 237
            ETPEAHVFKADLPG+              LQISG+R +EKEDKND WHR+ERSSG F RRFRLPEN KMDQ+KA+ME+G
Sbjct:   57 ETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENG 135          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.099e-25
Identity = 59/102 (57.84%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETPEAHVFKADLPGL              LQISG+R +EKEDKND W RVERSSG F RRFRLPEN KMDQ+KASME+G                 +I ISG
Sbjct:   53 ETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CX070005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP12_SOLPE9.905e-2759.8017.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17B_ARATH1.294e-2658.8217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP16_SOYBN6.420e-2657.8418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN1.095e-2556.8617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_MEDSA1.430e-2569.6218.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_SOYBN1.868e-2557.8417.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.868e-2557.8418.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN3.186e-2556.8617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA5.435e-2567.0918.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOLPE7.099e-2557.8417.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C01-E2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070005 ID=CX070005; Name=CX070005; organism=Citrus sinensis; type=EST; length=425bp
GAAACCCCGGAAGCCCACGTGTTCAAGGCCGATCTTCCGGGGCTGAGGAA
AGAGGAAGTGAAGGTCGAGGTCGAAGATGACAGGGTGCTTCAGATAAGCG
GTCAGAGGAAGATTGAGAAGGAAGACAAGAACGACACGTGGCATCGCGTT
GAGCGTAGCAGTGGCATGTTCTCAAGGAGGTTCAGGCTGCCTGAGAATGT
GAAGATGGATCAGATTAAGGCTTCCATGGAGAGTGGTGTGCTCACTGTTA
CTGTTCCGAAAGTGGAGGTGACCAAACCTGATGTTAAGGCTATCGCAATC
TCTGGTTAAACCAGTGTCTGTCTGTATGTCTTTATGCATACTTGTATAAG
GATGCTGTGATGTTTTGGTTTTGTAATTTGCTTGCATGAATGTTTGTGTA
ATGGTATTCTGTTCATTTGAGCTTT
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